Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00937 ATGGGTAAACGTTTGTCCCGAACACTCGATCACGATCCTCAACTGTCAGATCTCAATCATGTTGCCCAAGATGATGATGCACTTAACAGGGAGCTTCAGGACAAGTTGGATTTGAAGGATGTGAGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTGGGAAGTTGAGTGATGAAGGTGCTGCACCTGAAGGTGGTAAGGGTGAAGGGAGTGAGGATGGTGGCGGTGGTGGTGGTGATGATGTTGGTGTTGGTGTTGTTGATGATGATTGCAATGGAGGGGACGGATGGTGTAATTGGATTGAGTATGTGAATGAGAGTGAAAGTGATAAGGTGGGTGGAGATGTGGAGGGAGTAGATAGCAGGGATGAGAGGAGCAGTGGGAGAGATCAACAGTACCCGTTGAGGCCAGAGGCTGAAAACTGTGCATATTATCTCAAAACTGGAAGTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTTAAGAGGAAAAACCAGGCTAAGAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGTGGGTGTAAGTTTGGGAAGGCTTGTAAGTTTAATCACAAAAGGGAAAAGTGTTCATCTGCATCCCCAATTGCAGAGCTTAACTTCCTTGGCTTGCCTATTCGAGTGGGAGAGAAAGAGTGTCATTATTTCATGCGTACTGGCTCTTGTAAGTTTGGATTAAACTGCAAGTTTAATCATCCTGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTAGATTTGGTAATGGAAGTTCTGTTTCATTACAAGGTGTATCGCAATCATCTATATCTTCATGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCAATGATACTTTCAGCTAATCCAGGGGTTTCTCCTCAAAGTTCTGAATGGGACGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGTTATGGAAACAAATGTTTATATGCATCATCAACAACAAGTGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTTTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAGGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAGCTTTAGTAACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTTAACTATGAGTGGACTTGATCAACAATCCTCGTACTCAAATTCTGCTAGTGTTGATGTGGCTGAAAATGGAGGTGTCAGTGATGGGAATCAATAG 1419 0.432 MGKRLSRTLDHDPQLSDLNHVAQDDDALNRELQDKLDLKDVSESEDKGSNLEDGGGKLSDEGAAPEGGKGEGSEDGGGGGGDDVGVGVVDDDCNGGDGWCNWIEYVNESESDKVGGDVEGVDSRDERSSGRDQQYPLRPEAENCAYYLKTGSCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHKREKCSSASPIAELNFLGLPIRVGEKECHYFMRTGSCKFGLNCKFNHPDPTAGGGDSPSRFGNGSSVSLQGVSQSSISSWSSTRPLNESTPFVPMILSANPGVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMHHQQQVQVEEFPERPGEPECSYFLKTGDCKFKSNCRFHHPKNRIARLPPCSFSNKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPLTMSGLDQQSSYSNSASVDVAENGGVSDGNQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00937 472 SUPERFAMILY CCCH zinc finger 233 259 IPR036855 GO:0046872
Vian4g00937 472 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Vian4g00937 472 Gene3D - 323 404 - -
Vian4g00937 472 Gene3D - 117 174 - -
Vian4g00937 472 ProSiteProfiles Zinc finger C3H1-type profile. 413 441 IPR000571 GO:0046872
Vian4g00937 472 MobiDBLite consensus disorder prediction 1 54 - -
Vian4g00937 472 SUPERFAMILY CCCH zinc finger 137 166 IPR036855 GO:0046872
Vian4g00937 472 SMART c3hfinal6 413 440 IPR000571 GO:0046872
Vian4g00937 472 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Vian4g00937 472 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Vian4g00937 472 SMART c3hfinal6 234 259 IPR000571 GO:0046872
Vian4g00937 472 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Vian4g00937 472 MobiDBLite consensus disorder prediction 111 135 - -
Vian4g00937 472 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Vian4g00937 472 Gene3D - 412 458 - -
Vian4g00937 472 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Vian4g00937 472 SUPERFAMILY CCCH zinc finger 411 438 IPR036855 GO:0046872
Vian4g00937 472 Gene3D - 175 262 - -
Vian4g00937 472 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vian4g00937 472 MobiDBLite consensus disorder prediction 111 133 - -
Vian4g00937 472 MobiDBLite consensus disorder prediction 445 472 - -
Vian4g00937 472 MobiDBLite consensus disorder prediction 1 88 - -
Vian4g00937 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Vian4g00937 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 369 394 IPR000571 GO:0046872
Vian4g00937 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 210 IPR000571 GO:0046872
Vian4g00937 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Vian4g00937 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 258 IPR000571 GO:0046872
Vian4g00937 472 SUPERFAMILY CCCH zinc finger 188 214 IPR036855 GO:0046872
Vian4g00937 472 PANTHER PROTEIN PHOSPHATASE RELATED 50 455 - -
Vian4g00937 472 SUPERFAMILY CCCH zinc finger 372 396 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00937 Vian-Chr4 13561054 13564961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00937 363 462 C2H2 Transcription Factor Family AT3G02830 45.631 4.93e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian4g00937 zf-CCCH 6.6e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01271 1 13748431 13752336 Vian4g00937 4 13561054 13564961 ECH
Vian4g00937 4 13561054 13564961 Vian4g00937 4 13561054 13564961 ECH
Vian1g01271 1 13748431 13752336 Vian4g00937 4 13561054 13564961 PCT