Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00936 ATGAGAGCCACGGAGAAGAAATCAGGGATAATGGGAGGGGGTTCTGAGGGTAGTGCCGACGTTTTGCCGTGGCTGAAATCGATGCCGGTAGCACCGGAGTACCGACCGACTGCGGCAGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTTCTCCAAAGAAAACCGCCATAGCCAACCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGGCCCCGCCCTGTGCAGCGCCCCGTCTGGCAGAGCGGTGACCACTATACCTTCACGGAGTTCGAGTTCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAAGGCCCGAGCCCAGGCCCAGGTCTGACCCCACTTGAGACCGAAACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTAGAATACGCGAACGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGGCACACAGGGGATCCCACCTCCCTTGCGGACACTCCTTGGAACATGCGAGTTGTTTCCCGGGCCACGGGCTCACTCTTGCGCTTCATGAAGGAGGAGATTCCCGGCGTTACTTCTCCCATGGTCTATGTTGCCATGCTCTTCAGCTGGTTTGCGTGGCATGTCGAGGACCACGACTTGCATAGCCTGAACTACCTCCACATGGGTGCCGGCAAGACTTGGTATGGCATCCCTCGAGATGCTGCTGTTGCTTTTGAGGAGGTTGTTAGGGTTCACGGCTACGGTGGAGAAATTAATCCTCTCGTTACATTTGCTATTCTTGGTGAAAAAACCACGGTGATGTCGCCTGAAGTATTTCTTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCTACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCAAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGACCTGCTTCATATACTGGGGAAAGGATCTGCTGTAGTACTTCTACCTCGTAGCTCAGTTGACATTTCTGTTTGTGCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGATTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAACTTTCTATTCTGTGAAAGACAAGTTTAGTATGATATATGAAAGGAATAGGGTTTCCTCTTTTGATGTAAATGGTAGCTTAAGCACTTCAAGTTCTAAGCCACTTCAAAGGGACACTGAGGGAGAAACTAGTAAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGATCCGGCAGCTAGATATCTCATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAGTAAACTTACTACTGCCCCTGAAGAAGCAACTATTCCTGTGCCAAATATGTATACAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCGGTATGCCTTAAGTATTGAAAGTGAAAAGGGCAATACAGCTCTTGCACTATTGGCTTCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTTCAGTTGATGATCATGAAACAAATGTGCTGATCTCAGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCCATGCTAGTCCCGTGTCTGCACTTGATAGCGGAGATAATATTACTTTGATGAGTACCAGTTGTGAGGGTTTAATGCATCGCAGATTTGAGGGTAATTTAAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATATGAAGACAGTGCCTACTTCCACCTCCAATTGTTCCCAAGATGCCAATGATGCTGAAAGGTCATTGTGTAAAATGTCTATGGTTCCCTTTGATAATAAAAATGCTTCCATGGTGTTACAGTCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCATGCTGCAGAAGCAGAGAAGCAACTTCGCCCAATAGGTGGAGCCCACATATTTCTCCTATGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAACTGGTGGCAGAAGATTTGGGGATTGATTACACATGGAAGAGTATTGCATACAGGCATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTCGGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGAATCAATCTCTTTTATAGTGCACATCTTAGTCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTGTGCATTTGGTTGTAGCTCTCCAGCTAGCTCACCCGAAGAGCCAAAGGTCTATCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCTAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAAGATGCTGAGGATGAGAAAATCTTACTTGGGTGGATATTACCCGAGGAGAGAATTGAGAGATCAGAAAGTACCCCTAAAGGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAATCGACAGCAGAGAATGGACGAACCAGGAAAGTAAGTTATGCTAAGAAAAATGTAGTTTCATATAATTCCACTGAAGATAAACCCAACTCACAGCCAAGGAGTGTTCATAGAAGTAAGAAAGCCAGGAATGTTGGGAGAGATCGTACTGCTTTGAAAGGGGATACTTCTGCATATAATCATAGAAAACCTATAAGCAAACAAACAAACTTTACTGAAAGTGATGCGGTTTCTGATGATTCACTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATGATGTGGTTTCAGATGATACAGGGGACTGTGATTCTGATTGGCAGCAGAGGGAAGAACATAGCAGCAAGGACGATGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTGAAGGCAAGCATGACAAATTCATCAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTTGTTTTCAAAAGCGGCAAAGGAGAACTCCTAAAAGCAGGCAAGCTAAGTATCTGACTGGAAAAAGTATAATATCCGACGACCAGCTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCGTCAGATGACCAATTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGCAGAGGAAGATGAAATGTCTGGTGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTTCTCTAGGAAAAAGCAAAACAAAGGCATTAATAGAGAAGATAAATATGTAATGTCTGATGACCAATTGGAGGATCATTTTCCAAAGCAGCAAAGAAGAATTCCGAAGAGCAGGCAAAACAAATACCTTGATAAAGAAGTTATGGATGACTCGGCTGAAAACAATTCTCGTCTGCTGCATAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGACGAAGATGATTTGAATTCAGATGATGAAATGGAAGATGATCAGAAGCTGAGGAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAAGCCAATTCCGTCCATGCAAAAAACCAGGCATCTCGGTCCATAAAACGGGGATCTCGGGTTCTTGTGAAATCAAAGACACCTCAGCAAATAAAACCGCGGAATAAGCAATCCTCTAACTCCCGAGAGTTTAGTTTACTAATGGAAGACGAGGAAGAAGGTGGACCTAGCACCCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGGGACTGAAGGAAAATTGAAAGAGAAGCAAACAAAAAGGAAGAAGGTGAAGAATGATTCAACAGGAAAGGTTTCAGTTGGTCATGTCAAAGGAAAGGAAGAGGAAGCAGATTATCAGTGTGATATTGATGGGTGCAGTATGAGCTTTGGGTCAAAACAGGAGCTGCTGCATCACAAGAAAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGAAGAGTTCATGAGGATGAGAGACCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGCCCTTATGTGTGTGCAGAGCCAGGTTGTGGACAAACTTTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCGGCGAAGAAGAGTCGTCAATAG 4746 0.444 MRATEKKSGIMGGGSEGSADVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFEFKAKSFEKAYLKRHTRKGPSPGPGLTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPTSLADTPWNMRVVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGIPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFLSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSAVVLLPRSSVDISVCAKLRVGSQQSINVSNSEGMHSSKDFVSDDLVFNRSHGIKQEKTFYSVKDKFSMIYERNRVSSFDVNGSLSTSSSKPLQRDTEGETSKEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLMSADCSFFNDWVVGSGVSNSKLTTAPEEATIPVPNMYTGWMKKNVQDGMQDVSVQSSRYALSIESEKGNTALALLASAYGNSSDSEEDQISVDDHETNVLISASESLLSHTQDSHASPVSALDSGDNITLMSTSCEGLMHRRFEGNLSHQSLDHSLKKQDYNITSGVTFENMKTVPTSTSNCSQDANDAERSLCKMSMVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKLVAEDLGIDYTWKSIAYRHASKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPLYSKQMPYNSVIYCAFGCSSPASSPEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKILLGWILPEERIERSESTPKGETTSRKSGKKRKSTAENGRTRKVSYAKKNVVSYNSTEDKPNSQPRSVHRSKKARNVGRDRTALKGDTSAYNHRKPISKQTNFTESDAVSDDSLDDEDDHMQHGRNFDIDNDVVSDDTGDCDSDWQQREEHSSKDDEDMERDAISEDSEGKHDKFISEEDIISDDQMESCFQKRQRRTPKSRQAKYLTGKSIISDDQLELKMQKQQRRNPKSRQAKYLNEEDIASDDQLEGHYRRYQRRNPKGRQAKCVAEEDEMSGDQLEDHCQKLQTSFSRKKQNKGINREDKYVMSDDQLEDHFPKQQRRIPKSRQNKYLDKEVMDDSAENNSRLLHRTPKRKQAKCMDEDDLNSDDEMEDDQKLRRTLRSKQSKPKTLQQMKQANSVHAKNQASRSIKRGSRVLVKSKTPQQIKPRNKQSSNSREFSLLMEDEEEGGPSTRLRKRATKAQGTEGKLKEKQTKRKKVKNDSTGKVSVGHVKGKEEEADYQCDIDGCSMSFGSKQELLHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00936 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1518 1547 IPR013087 -
Vian4g00936 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1548 1579 IPR013087 -
Vian4g00936 1581 SMART cupin_9 192 361 IPR003347 -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1350 1375 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1404 1451 - -
Vian4g00936 1581 ProSiteProfiles JmjC domain profile. 192 361 IPR003347 -
Vian4g00936 1581 FunFam Probable lysine-specific demethylase ELF6 1515 1544 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 976 1007 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1382 1403 - -
Vian4g00936 1581 SUPERFAMILY beta-beta-alpha zinc fingers 1528 1572 IPR036236 -
Vian4g00936 1581 Coils Coil 1426 1446 - -
Vian4g00936 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1520 1542 IPR013087 -
Vian4g00936 1581 Gene3D Classic Zinc Finger 1486 1516 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1259 1326 - -
Vian4g00936 1581 SUPERFAMILY Clavaminate synthase-like 192 379 - -
Vian4g00936 1581 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 976 1451 - -
Vian4g00936 1581 SMART JmjN_1 30 71 IPR003349 -
Vian4g00936 1581 Gene3D Classic Zinc Finger 1517 1539 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1104 1158 - -
Vian4g00936 1581 SUPERFAMILY beta-beta-alpha zinc fingers 1489 1521 IPR036236 -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1079 1095 - -
Vian4g00936 1581 FunFam Probable lysine-specific demethylase ELF6 24 365 - -
Vian4g00936 1581 Pfam jmjN domain 32 65 IPR003349 -
Vian4g00936 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1488 1517 IPR013087 -
Vian4g00936 1581 SMART c2h2final6 1548 1574 IPR013087 -
Vian4g00936 1581 SMART c2h2final6 1465 1487 IPR013087 -
Vian4g00936 1581 SMART c2h2final6 1488 1512 IPR013087 -
Vian4g00936 1581 SMART c2h2final6 1518 1542 IPR013087 -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 514 537 - -
Vian4g00936 1581 Gene3D Cupin 24 365 - -
Vian4g00936 1581 FunFam Probable lysine-specific demethylase ELF6 1545 1574 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1196 1219 - -
Vian4g00936 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1490 1512 IPR013087 -
Vian4g00936 1581 Gene3D Classic Zinc Finger 1540 1581 - -
Vian4g00936 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1550 1574 IPR013087 -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1056 1071 - -
Vian4g00936 1581 Pfam JmjC domain, hydroxylase 225 343 IPR003347 -
Vian4g00936 1581 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1284 - -
Vian4g00936 1581 MobiDBLite consensus disorder prediction 1011 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00936 Vian-Chr4 13535444 13544762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00936 1372 1579 C2H2 Transcription Factor Family AT3G48430 54.148 3.52e-67 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian4g00936 JmjC 9.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00936 - - gmx:100775271 2596.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00936 4 13535444 13544762 Vian4g00936 4 13535444 13544762 ECH