Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00930 ATGATGGAAGGACAGCGGCATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCCTCAACTAATTCTATGAGCAAGCTCTGTTATTTGGTGGATAATCTGCATTGGGAAAATGGTTCTGCTAATGACATTTCCCTTCGGTTCTCTGATGCTGCTAAGCCATGTGATTCTGATGATAATGCTGCTCTCAGATCAAGAAGTTTAGGTTTCAAGGGACAAAGGGAGCAGAAAAATGCTGATTCTGCATTCAACTCAAGGTTGAGGCCTAGTGGGATTTCTTGTCAGGGTCTCCAACAAGATGGTGAACCAGTAGTTTACTCTAAGCCTAATCTTCAATGCATTTCTGGAAACAAATCACCAAGTGAAAGTTGTGGTAGCAACCATGGGGGTAAAGGATTGGACTTGGCTTCTATTGTGCTTCCACGTAATAATGATTTCAAGGATGGGGATTCATGTTATGTAGCAACTACTAGATCATCTCAATTAGAGAGAATAGATTGCTCTAAGTCAGCAATAAAGTCTCTGCGCAAGAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTGTTGATGGCAATGTCAGTCCATACCCTTCTGGTTATGATGATTTCTCACCCTATAGTGGTTCAGTTGGCATAAATCAAGGTATGGATAGTTTAGATGATAATGATAATGGGTGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCTTTGGTATCTCACCGTGTTGATGAGTCAGATCTTCACGCACACAGAAGCATGAGAAACAATGGTGGTGGGATTGGTCTGAATTTGGAAACTCCTAGAAGTTTGTCGATGAAATTTAGGCCTAAAACATTTAGTGATTTGGTTGGACAAAATGTGGTAGTAAGGTCTCTGTTGGGGGCCATCTCCAGAGGAAGGATAACATCATTTTATCTGTTCTATGGTCCACGTGGAACCGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGTCTTTCTTTCGAGGAACAGAGGCCATGTGGCCTATGCAGAGAATGTATTGTATTCTTTTCTGGAAGAAGTAAAGATTTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACCGACCAGGTTAAGTCCCTTGTTAAGAGTGCAAGCACGCCTCCAGTCTCCTCACGTTTCAAGGTTTTCATTATTGATGAGTGTCAGCTATTGAATGGGGAAACATGGGCAAGCATTTCAAATAGCCTAGACAACCTTTCTCAACATGTGGTTTTCGTGATGATAACTCCTGATTTGGATAAGCTTCCTCGGAGTGTAGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGGTTAAAGACCCTGACATTGTATGCAGATTACAAAGTATTTGTGCCGAAGAAGGTCTTGATTTTGAACAGGAAGCTTTGGACTTTATTGCTGCAAAATCTTGTGGGTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTGGGTAAAAAGATCAATATCTCTTTAGCTTATGAGCTTGTAAGTCTAGCACTTTTGTTTATGTATTCCCTCCAACTTCAATTTTTCCTTTGCATTCTTGCTTACCCATTTGTTGTTCGGCAGACTGGGATCGTTTCAGATGATGAATTACTCGATTTGCTGGATCTAGCTTTTTCATCCGACACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAATTAGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAAATGGTGGTTCAGAAGTCAGAAGTAGATTTTATAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGCTGAGAATTTCGAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGCTAAGCTCTGTAGATTATCAATGCGTGGATGCAAATGACACCAAATTTAGTCTTAGAGGTGCATGCAATGGAGTTCAAAACTTGGAGCATTTTGCTAACAAGTCATACAGATTAGAAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTGAGATTTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGATAGAGTTCCACCATAGTCACCATGTATCCAAGGCCGAGAAGTCATGGAAAATGATTGCAAGCTCTTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCAGATTCTAAGTATTGCAAACTGAAGAGATCAACTTTCAGTTTCTTCACTTGTTCCCGCAGAAATCAGCAACAGAAGTCACTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGGTGATTGCGCCTCTGAAAATCCCATGATGAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTAACAGCTTTGAGGAGTTGTGAAGGGAATTTGCTGAGCTCAGGGGAAAGATTTTTGAATAGATCATTTCAAGAGAGTACGAAGACAACATGTGCTGAAGTTGATTCTTCCAAGGAAAAGGGTTGCAACGGTGCTCATCTAGATCCATCAATCCTCGATTCAGATAATGACCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCGTATTCATCCAAGTTGTCTTTTCAAGGCATTCAACAACAGAAAGATTTTGTTTTGTCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAATGAACCCTGCATTTTTTCTGGTAGTTGTAAGAATTGCACCAAAGCCTCTTAG 2955 0.4078 MMEGQRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCYLVDNLHWENGSANDISLRFSDAAKPCDSDDNAALRSRSLGFKGQREQKNADSAFNSRLRPSGISCQGLQQDGEPVVYSKPNLQCISGNKSPSESCGSNHGGKGLDLASIVLPRNNDFKDGDSCYVATTRSSQLERIDCSKSAIKSLRKNQVKPSELVGSVDGNVSPYPSGYDDFSPYSGSVGINQGMDSLDDNDNGCGISCCWSKSPRFRESNLYGEIEDRPLVSHRVDESDLHAHRSMRNNGGGIGLNLETPRSLSMKFRPKTFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIVFFSGRSKDFKEVDSVRINRTDQVKSLVKSASTPPVSSRFKVFIIDECQLLNGETWASISNSLDNLSQHVVFVMITPDLDKLPRSVVSRAQRYHFPKVKDPDIVCRLQSICAEEGLDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELVSLALLFMYSLQLQFFLCILAYPFVVRQTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSRFYRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQCVDANDTKFSLRGACNGVQNLEHFANKSYRLEVPEDHKGTLDSIWYKATEICHSSQLKTFLRKKGKLSSLHVDRSTACLAIAEIEFHHSHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSKYCKLKRSTFSFFTCSRRNQQQKSLSSNEQGSESDYGDCASENPMMKDKTSTSDCGMDAVTALRSCEGNLLSSGERFLNRSFQESTKTTCAEVDSSKEKGCNGAHLDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSKLSFQGIQQQKDFVLSVPKCTCSGTYTYANEPCIFSGSCKNCTKAS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00930 984 SMART AAA_5 326 469 IPR003593 GO:0016887
Vian4g00930 984 FunFam DNA polymerase III subunit gamma/tau 467 530 - -
Vian4g00930 984 Gene3D - 558 672 - -
Vian4g00930 984 Coils Coil 634 657 - -
Vian4g00930 984 SUPERFAMILY post-AAA+ oligomerization domain-like 565 667 IPR008921 GO:0003677|GO:0006260
Vian4g00930 984 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 296 711 - -
Vian4g00930 984 MobiDBLite consensus disorder prediction 824 844 - -
Vian4g00930 984 CDD HLD_clamp_pol_III_gamma_tau 467 528 IPR045085 -
Vian4g00930 984 Gene3D - 288 465 IPR027417 -
Vian4g00930 984 Gene3D - 469 532 - -
Vian4g00930 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 516 IPR027417 -
Vian4g00930 984 Pfam DNA polymerase III, delta subunit 310 467 - -
Vian4g00930 984 NCBIfam DNA polymerase III subunit gamma/tau 294 530 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vian4g00930 984 FunFam Protein STICHEL-like 1 isoform C 559 672 - -
Vian4g00930 984 MobiDBLite consensus disorder prediction 824 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00930 Vian-Chr4 13424256 13427999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00930 298 521 Core DNA Replication Machinery Family AT1G21690 27.632 1.02e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00930 - - gmx:100812040 1535.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00930 4 13424256 13427999 Vian4g00930 4 13424256 13427999 ECH
Vian1g01269 1 13721794 13725443 Vian4g00930 4 13424256 13427999 PCT