Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00927 ATGGATTCCCCAACTCTTCTCTTCCCCCAACCCGATCTCTATTTACAGACTCGCGCTGGCAACCGCATTCCAGCGCACGCTACCATTCTGGCTTCCGTATCCCCGGTTCTACAAAACGTGATAAAGTCCTCCAACCGAATCGTCAAAATTCACGGCGTTCCAGACGCTGCCGTCACGGCTTTCGTAGCGTTCCTCTACTATGCCAGGTGCACGGAGGAGGATATGCATAAGTACGGAATGCACCTTCTTGTACTGTCGCACGTGTACATGGTGAAGCATCTGAAACAGCGGTGCATCAAGGGACTGAGCGACCGCGTCAGTACGGAGAACGTAGTGGACGTGTTGCAACTGGCGCGGCTCTGCGACGCGCCGGATCTCTACCTCAAGTGTGCCAGGCACCTCACGAACCGTTTCAAAGCGGTGAAGGAAACCGAGGGATGGAGATTCTTGCAGAACCACGACCCCTGCCTAGAGCTTGAGATTCTCCGTTTCATGGAAGAACATGAAAAGAGGAAGAGGAAGGCGAGGAAGAGAAGGGAGGATGGTAGGTTATACACGGAATTGAGCGAAGCGATGGTATGTCTGGAGCACATATGCACGGAGGGGTGCACGGAGGTGTGGCCGTTTGATGTGGAGGTCAGGCGAGAGAGAGAACCGTGTTCAATGTTCGGCACGTGTCAGGGTATGCAAAATTTGATTCGACACTTCGCCACCTGCGAGAGCGTTAAGCGACGGTGTTTACGGTGTAAGCGCATGTGGCAAATCTTCAGACTTCATTCCTCTATTTGCCTGCGACAAGATACCTGCAAGGTTCCTCTGTGCAGTCAAATCAGATTAAAAATGGAGCAAGGGAAGAGGAAAGGTGACGCAAGGTGGGAACTACTAGTGAGGAAGGTGGCCTCGGCCAAAGCCATGGCTTCCTTGGCACTGCCAAAAAGGAAGATGGTTGAGGAAAGTAGACGAGAGGTACCATAA 975 0.5251 MDSPTLLFPQPDLYLQTRAGNRIPAHATILASVSPVLQNVIKSSNRIVKIHGVPDAAVTAFVAFLYYARCTEEDMHKYGMHLLVLSHVYMVKHLKQRCIKGLSDRVSTENVVDVLQLARLCDAPDLYLKCARHLTNRFKAVKETEGWRFLQNHDPCLELEILRFMEEHEKRKRKARKRREDGRLYTELSEAMVCLEHICTEGCTEVWPFDVEVRREREPCSMFGTCQGMQNLIRHFATCESVKRRCLRCKRMWQIFRLHSSICLRQDTCKVPLCSQIRLKMEQGKRKGDARWELLVRKVASAKAMASLALPKRKMVEESRREVP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00927 324 SUPERFAMILY TAZ domain 182 283 IPR035898 -
Vian4g00927 324 CDD BACK 107 150 - -
Vian4g00927 324 FunFam BTB/POZ and TAZ domain-containing protein 2 107 177 - -
Vian4g00927 324 Pfam TAZ zinc finger 189 274 IPR000197 -
Vian4g00927 324 Gene3D - 107 181 - -
Vian4g00927 324 Gene3D Potassium Channel Kv1.1; Chain A 9 106 IPR011333 -
Vian4g00927 324 SUPERFAMILY POZ domain 12 104 IPR011333 -
Vian4g00927 324 ProSiteProfiles BTB domain profile. 11 74 IPR000210 GO:0005515
Vian4g00927 324 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 10 316 IPR044513 -
Vian4g00927 324 SMART TAZ_2 182 275 IPR000197 -
Vian4g00927 324 Gene3D TAZ domain 183 307 IPR035898 -
Vian4g00927 324 Pfam BTB/POZ domain 11 102 IPR000210 GO:0005515
Vian4g00927 324 FunFam BTB/POZ and TAZ domain-containing protein 2 179 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00927 Vian-Chr4 13334360 13337819 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vian4g00927 BTB 5e-08 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00927 - - pvu:PHAVU_009G170600g 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00927 4 13334360 13337819 Vian4g00927 4 13334360 13337819 ECH
Vian1g01265 1 13654701 13657802 Vian4g00927 4 13334360 13337819 PCT