Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00924 ATGGACGAAGAAAACCAACAAAGTGTGCCGGTTCTGCCATGGATGCGCCACCCCGTCGATGTCACTCACTGTGAACAACTCTCCCTTTGCAGAGTTCCTTTTCTGGACCGCAGATTAAAGTCAGCGCTAGAAAACTTGGAAATCTCAAAGCTGTTCCCAGTTCAAGTTGCGCTATGGCAAGAAACTATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTGCAAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATCATATTGCATTGCCATTAGGCCTGCGTGTGGGGTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATATCTAGTCTCGTTTACCTACCGGGGGACAAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTTTCTAGGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGTGAGGACTACCAGTCCTGGTTGCCCACCGTACTTAAATTAACCCAATCTAGCAACAATGATTATGGTGGTGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGAACATGTGGAGTTGAGAAGGGGTCTAACCCTCACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGAAGGCTTGTTAAGCTTAATTTGCATCACCCTTTGTTCCTCAGTGCTGGCAAAATGCGGTATAGGCTCCCAGAAAATTTGGAATCATTCAAACTGATCTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAATTTGCTGAATTGTTTTGAAGATCTGCAAATTGACATCAAAGAGTATTCTGGTCGTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAATTTAGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGACGTAAGAAATGCTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTTACATTGATGTCAAAAGATGAGGTTGGACGGTTTAATAGGTTGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATACTGTTCCCTCCCATTTGATTAAAGAACTTCATAGTACCTACCAATCAGCACTATCAAAATTAAAGGAGATAATATTGGAGAGTCGCAGGAAGCCCAAGGATAAGTCCTGTCAATAG 1494 0.4478 MDEENQQSVPVLPWMRHPVDVTHCEQLSLCRVPFLDRRLKSALENLEISKLFPVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDHIALPLGLRVGLAVGQSSVADEISSLVYLPGDKEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNFSRGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKLTQSSNNDYGGDDVFQLGFPYSPWSRRTCGVEKGSNPHSRLAKVVLSATLTRDPGRLVKLNLHHPLFLSAGKMRYRLPENLESFKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCNLLNCFEDLQIDIKEYSGRQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDVEDVRNAINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVGRFNRLMKKAEASACLEHTVPSHLIKELHSTYQSALSKLKEIILESRRKPKDKSCQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00924 497 Pfam DEAD/DEAH box helicase 59 277 IPR011545 GO:0003676|GO:0005524
Vian4g00924 497 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Vian4g00924 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 291 IPR014001 -
Vian4g00924 497 PANTHER RNA HELICASE 35 458 - -
Vian4g00924 497 Gene3D - 304 496 IPR027417 -
Vian4g00924 497 CDD SF2_C_DEAD 304 435 - -
Vian4g00924 497 SMART helicmild6 343 427 IPR001650 -
Vian4g00924 497 Pfam Helicase conserved C-terminal domain 316 427 IPR001650 -
Vian4g00924 497 Gene3D - 13 294 IPR027417 -
Vian4g00924 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 447 IPR027417 -
Vian4g00924 497 SMART ultradead3 47 307 IPR014001 -
Vian4g00924 497 CDD DEADc_DDX51 39 292 - -
Vian4g00924 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 469 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00924 Vian-Chr4 13271446 13275746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00924 57 440 Eukaryotic Initiation Factors Gene Family AT3G13920 24.416 9.01e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00924 K14807 - gmx:100789424 706.827