Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00919 ATGACTGTGACGGCGGCGCCAACTGTGAAGGACGGGTGTCTTACGGTGAGGGGAAAGACCGTTTTGTCCCATGTCCCCGGAAACGTTGTTGTTTCTCCGGTTGGAACAGAGTCCGCGTTCTTGGGTGCAACTTTAACCGTTTCAAGTTCTCGTCATGTTTTTGATCTTGGAATTCTTCAAGTAAAAATCTGGTGGATGATACCGCGTCTAGGGAGGTCTGCCAGTGATGTTCCAATGGAAACTCAATTGCTGCTCCTGCTAGCAAATGAAGAATCAGCACTTGAGGATGAGCCTTCTTCTGACTGTGAAGAGCCAGCTACGGATAAAAATTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTACAAGGAACTCAATCGAATCAGCTCCAGTTTTGCATTGAAAGTGGAGATGCCAATGTTCAAACTTGCCAATCACTAGAATCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCAATCAAGATATTGGAGAAACACAAAGGGACTTTCTGTCATCTCGAAAACAAGAGGATCCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAATCCACAAGGAATAAAAGAGGGCCTTCAGAGTTTCTCAGATGGAGGTTGTTCGCCAAAGTTTATCATCATTGATGATGGATGGCAAGAGATCCTCAATACGTTTCACAAAGAAGGTGAAGCAGTGATCGAGGGAACCCAGTTCGCAACTAGACTAGCAGACATCAAAGAAAACAAAAAGTTCATCTATTCAGATTCTGACAATTCTTGCAGCAATCTCCACGATTTTGTTGACTATATCAAACATAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTGTACTCCCATCATCAAATACAATGAAGAAATATAATCCAAAGCTTGCATATCCAATTCAGTCACCGGGTGCCACAGGGAACCTTAGAGATATAGCCATGGACAGCCTGGAAAAATATGGAGTGGGAATCATTGACCCAGAAAATCTGTATGACTTTTACAATGACTACCACAGTTACCTTGTCAGCTGTGGTGTGGATGGAGTCAAAGTAGACGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGTGTTTCATTGACCAAACGGTATCAAGAAGCATTAGAGGAATCTGTAACAAGGAACTTTAAGGATAACAACCTTATTTGCTGCATGTGTCACAACTCGGATTCAATATACAGTTTGCTGAAAATTTGGAACTTGAATGCACTGACCGGGGTGGTAGGCGTTTTCAATTGCCAAGGAGCAGGAAGCTGGCCACTGAAATCGCTGGAAGCAGAACCTTTTCACATAACCATTTCAGGGAAACTGAGACCCCTTGACGTTGAATTTCTTGAAGAAGTTGCAGGAGAAAATTGGAGTGGAAATTGCATAGTATATGCCTTCAATGCAGGCTTGCTTTCCATGGTTTCTCTGAGAGGAAAACTTGAAGTGTCCCTGGATACACTTCAATGTGAAATATATACAGTATCTCCAATAAGGGTGTTTGGTCATAATGTGCACTTTGCACCAATAGGATTGCTTGACATGTACAATTCGGGAGGAGCAGTAGAGGCCTTGCACTGCAACATGGATGTTGCACAGTGCATAATAAAAGTCAAAGGCAGAGGTGGTGGCCGTTTTGGAGCCTACTCCAACGTTAGACCAAAGCTTTGTGTAGTGGACATGAAGGAGGAGGAGTTTTCCTACAACCCTGAAGATGGATTATTGACGTTTAAGCTTGATGGTGAAGGCAATTCAAGGGATATAGAATTTACGCTCTTGTTGTTTTTGTTGTTCTTCTTCTCTTGTTCCAACCCCTTCACCGTTTCTTACATGTCTATCACTGCCACTGCGTTCAAGTCTCTCACCATGGCCGATTCGTGCCTCCTCTCTTCTCCCTCATCCCTCTTTCACAACATAACCAAATCCCACGTTTTCTCACCTCCTTCCAAACCCCTTACACTCCAATTCTCATGCCTCAATTCCTCCCCCTCGCTCTCTCTCTCCCTCGCTGCACGAACCCACCGTTACCCCGTCCTTACCCACGTCGCCCAAACTTCTGATTGGGCCCAGCAAGAAGACAACGCCGCCACCTTACAGGACCAAGAGGAAGAACAAGAAGGGGGTGGCCTCCTCGATTGGGAGGTCGCGGGCGAAGGCGTGGAAGATGAGGGTTTCGTGGAACCACCGGAAGAGGCCAAGCTCTTCGTCGGGAACTTGCCTTACGACGTTGATAGTCAGAAATTGGCCATGCTATTCGAACAAGCCGGAGTCGTCGAAATCGCCGAGGTGATTTATGCCAGGGACACTGACCGGAGTCGTGGATTTGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGAGAAATTCAATAGCTATGATTATGATGGAAGACTGTTGACTGTTAATAAGGCTTCTCCGAGAGGAGCTCAACCTGAACGCCGACCTCGTCGTAACTTTGAGCCTGCCTTTTCTGTCTATGTTGGTAATTTGCCGTGGGATGTTGATGGTACCAGGTTGGAGCAAGTTTTCAGCGAGCATGGTAAGGTTTTGAGCGCTAGGGTAGTCTATGACAGGGAGAGTGGTCGTTCACGTGGCTTTGGCTTTGTCACAATGTCGGATGAGTCAGAAATGAATGATGCTGTTACTGCTCTTGATGGTCAGACTTTGGACGGAAGGACAATTAGGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTTTTGA 2841 0.4558 MTVTAAPTVKDGCLTVRGKTVLSHVPGNVVVSPVGTESAFLGATLTVSSSRHVFDLGILQVKIWWMIPRLGRSASDVPMETQLLLLLANEESALEDEPSSDCEEPATDKNCYILFLPVLDGQFRATLQGTQSNQLQFCIESGDANVQTCQSLESVFVNSGDNPFELIRDSIKILEKHKGTFCHLENKRIPAHLDWFGWCTWDAFYTEVNPQGIKEGLQSFSDGGCSPKFIIIDDGWQEILNTFHKEGEAVIEGTQFATRLADIKENKKFIYSDSDNSCSNLHDFVDYIKHNMNVKYVYMWHALAGYWGGVLPSSNTMKKYNPKLAYPIQSPGATGNLRDIAMDSLEKYGVGIIDPENLYDFYNDYHSYLVSCGVDGVKVDVQNLIETLGSGYGGRVSLTKRYQEALEESVTRNFKDNNLICCMCHNSDSIYSLLKIWNLNALTGVVGVFNCQGAGSWPLKSLEAEPFHITISGKLRPLDVEFLEEVAGENWSGNCIVYAFNAGLLSMVSLRGKLEVSLDTLQCEIYTVSPIRVFGHNVHFAPIGLLDMYNSGGAVEALHCNMDVAQCIIKVKGRGGGRFGAYSNVRPKLCVVDMKEEEFSYNPEDGLLTFKLDGEGNSRDIEFTLLLFLLFFFSCSNPFTVSYMSITATAFKSLTMADSCLLSSPSSLFHNITKSHVFSPPSKPLTLQFSCLNSSPSLSLSLAARTHRYPVLTHVAQTSDWAQQEDNAATLQDQEEEQEGGGLLDWEVAGEGVEDEGFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGVVEIAEVIYARDTDRSRGFGFVTMSTVEEAEKAVEKFNSYDYDGRLLTVNKASPRGAQPERRPRRNFEPAFSVYVGNLPWDVDGTRLEQVFSEHGKVLSARVVYDRESGRSRGFGFVTMSDESEMNDAVTALDGQTLDGRTIRVNVAEDRPPRRSSF 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00919 946 SMART rrm1_1 766 839 IPR000504 GO:0003723
Vian4g00919 946 SMART rrm1_1 861 934 IPR000504 GO:0003723
Vian4g00919 946 PANTHER - 1 432 IPR008811 -
Vian4g00919 946 SUPERFAMILY RNA-binding domain, RBD 852 944 IPR035979 GO:0003676
Vian4g00919 946 CDD RRM2_NsCP33_like 862 936 - -
Vian4g00919 946 Pfam Raffinose synthase or seed imbibition protein Sip1 9 432 IPR008811 -
Vian4g00919 946 SUPERFAMILY (Trans)glycosidases 191 431 IPR017853 -
Vian4g00919 946 Gene3D Aldolase class I 191 443 IPR013785 -
Vian4g00919 946 Gene3D - 851 945 IPR012677 -
Vian4g00919 946 SUPERFAMILY RNA-binding domain, RBD 761 854 IPR035979 GO:0003676
Vian4g00919 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 765 843 IPR000504 GO:0003723
Vian4g00919 946 Gene3D - 712 850 IPR012677 -
Vian4g00919 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 767 836 IPR000504 GO:0003723
Vian4g00919 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 862 932 IPR000504 GO:0003723
Vian4g00919 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 860 938 IPR000504 GO:0003723
Vian4g00919 946 FunFam 31 kDa ribonucleoprotein, chloroplastic 849 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00919 Vian-Chr4 13079855 13088975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00919 1 432 Glycoside Hydrolase AT3G57520 52.466 2.39e-162 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00919 - - gmx:100816978 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01258 1 13613770 13616133 Vian4g00919 4 13079855 13088975 ECH
Vian4g00919 4 13079855 13088975 Vian4g00919 4 13079855 13088975 ECH
Vian1g01258 1 13613770 13616133 Vian4g00919 4 13079855 13088975 PCT