Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00908 ATGCTGCCGGATTCCTCCGAGCAGGACCTCGACGATCCTGACATGGAATTCGTCGAGGTGGATCCCTCTGGTCGTTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAATTGGAAGGTATTGAAGTGGCTTGGAATCAGATTAAGCTGGCGGATGTGTTACGTAACTCTGAAGATTTCGAGCGACTTTATTCGGAGGTTCATTTACTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTATAACTCATGGATTGACTCTAAGAGCGAGAACATCAACTTCATTACTGAAATTTTCACCTCAGGAACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTCTGGAAGGCCTTCACTATCTTCACAGTAATAATCCTCCGATCATTCATCGTGACCTGAAGTGTGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCGGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAGTTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTTGGTATGTGCTTGCTAGAGTTGGTAACAGTTGAGTACCCGTATGTTGAATGTGCCAATGCCGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCCTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTCATGTATCTGAACGGTTGTCTGCGAAGGACCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGGCCGATCTTCAAAAGCTCAAACCCATCATTTAGCAAATATTTCTCATAATCAAGCTATTGTTGTGGATACTTCTGCTGAGGCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGAGAATTGCAGATTCCTCAGGTCATATTCGCAATATCCACTTTCCTTTTGATATCGAAGCAGACACTTCAACCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAACTAACTGATCAAGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCGGTTTCACATTCCTAGTTGGAACGTCAGTGAACTTCCTGTTGACAGTTATAGTCAAGATTCAGGCTATACCTCTGAAAGTAGGCCAGAGGCCTCTCCTATGAAACACGATTCCATTACTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGAAAGTTCTGGTCTGACTCGCCAAAGGGAGTTGGTGGAAACTCTCCATATCGTGCTGGTTCTTCAAACTTTTGTTCTGCTGCAGATGCAAACGCTGCGGATGGTAGTCTGGCCGCGAATGGTGATATTTCAGCAGATGATCGTGTTGGTGATTGTAGTGATGAGAAGGAGTGTGATGAGATTGTTGATTCCCCTTCCAGTGAAAAAAGTATTAAATCAGGTGCAACCAGTGAAAAATCTGCTGTGAATGTAATATCTGGAACCGTGAAAGATTCAGAAGCAGAATACATCAATCTCATAGCAACAAAACTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAATTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGAAGGAACTTTCTCCAGAAATTAGCCAGAAGGTTCTAAATATATGCAACCTACAGATGCCTGGCGGTGAAGTGAAGGGAGAGGCTCCCGCTTCATTCATCTAA 1833 0.4173 MLPDSSEQDLDDPDMEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKLADVLRNSEDFERLYSEVHLLKTLKHKNIIKFYNSWIDSKSENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLHYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDPEVKAFIEKCIAHVSERLSAKDLLMDPFLQSDYDNESVGRSSKAQTHHLANISHNQAIVVDTSAEASREFTVEGQRRDNNTIFLKLRIADSSGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIRFHIPSWNVSELPVDSYSQDSGYTSESRPEASPMKHDSITSPGSLALEILPSGRKFWSDSPKGVGGNSPYRAGSSNFCSAADANAADGSLAANGDISADDRVGDCSDEKECDEIVDSPSSEKSIKSGATSEKSAVNVISGTVKDSEAEYINLIATKLENLLVKQREELDELKRKHKLAVSDLLKELSPEISQKVLNICNLQMPGGEVKGEAPASFI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00908 610 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Vian4g00908 610 MobiDBLite consensus disorder prediction 410 435 - -
Vian4g00908 610 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00908 610 CDD STKc_WNK 25 285 - -
Vian4g00908 610 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 340 394 IPR024678 GO:0004674|GO:0005524
Vian4g00908 610 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Vian4g00908 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vian4g00908 610 FunFam Probable serine/threonine-protein kinase WNK3 336 427 - -
Vian4g00908 610 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00908 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 578 - -
Vian4g00908 610 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00908 610 Gene3D - 336 418 - -
Vian4g00908 610 Coils Coil 548 575 - -
Vian4g00908 610 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Vian4g00908 610 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Vian4g00908 610 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00908 Vian-Chr4 12875694 12879270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00908 17 401 MAP Kinase Kinase Kinase AT3G22420 54.358 4.62e-164 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian4g00908 Pkinase 5.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00908 K08867 - gmx:100301899 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00908 4 12875694 12879270 Vian4g00908 4 12875694 12879270 ECH