Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00900 ATGCAGTGCCGAGACATCATGGTGCTCGTGCATGGAGTGATGGTTAAGGTCTTGGGAAGGGGGGAGGGGGATTCCAACGAATTGTTGGGTGTGAGAGGGTGGCGCGTGAGGGTTGAAGGAGTCGTTGCTGTTGGCGCCGACAACCGCCACAGGGTTGAGAAACACGAGATTTCCCGTCGCATAAAACCCTTCTCTTCTTCCTTCACAACTTCAGTTTGGAGCGACAACATGAGTGCTCCCATGGACACAGAGCTCACAACCTACGAAAATGGCACTGGTTCCCAACACTCACTTCCCGAGGACAAAGTACTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACCGCTAAAATAGAAGATGTTCGTTCCGCCGTCGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGCAGATAACGTGCAAAGAATTTGCGTTTGCGGATGTGATACTGGGGTTGACCCATTCCTTGTTTCATGGAACCGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTCGAAAGCCTCGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTGAAATCATCTCCTAATGTTATAATTCTAACAACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGCATCTTGACTAACTTACAGGATTGTAAGAATGTCATGCTTCCAAATTACGCATGTGCAAAGGAGAGGTTGAACGCACCAGATTTGCAGGAGGATTCTACATTCATGCAACTGTGCAAGCACCTATTGGATACAGCGGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTCTCAAATCCTTTTGATTGCAACCATATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGATTAA 1233 0.4574 MQCRDIMVLVHGVMVKVLGRGEGDSNELLGVRGWRVRVEGVVAVGADNRHRVEKHEISRRIKPFSSSFTTSVWSDNMSAPMDTELTTYENGTGSQHSLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYIDGPIPVPLDEAFLADNVQRICVCGCDTGVDPFLVSWNRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTNLQDCKNVMLPNYACAKERLNAPDLQEDSTFMQLCKHLLDTAEACEGMSGRSLRKLPFLAHAALSNPFDCNHIKFLCTMVETAKRERSELPD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00900 410 Gene3D - 163 311 IPR027417 -
Vian4g00900 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 378 IPR027417 -
Vian4g00900 410 ProSitePatterns AAA-protein family signature. 266 285 IPR003960 GO:0005524|GO:0016887
Vian4g00900 410 Pfam ATPase family associated with various cellular activities (AAA) 180 293 IPR003959 GO:0005524|GO:0016887
Vian4g00900 410 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 89 164 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00900 Vian-Chr4 12769435 12775481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00900 182 311 Calmodulin-binding Proteins AT3G56690 33.333 3.55e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00900 K22399 - gmx:100795009 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00900 4 12769435 12775481 Vian4g00900 4 12769435 12775481 ECH