Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00898 ATGGAATCTGGAGTTAGGTTCTACTCAGTTGATGAGTTCAGATTGGACCCCAAATGGCTGATTGATCCTAAGCATCTCTTTGTTGGGCCACAGATTGGAGAGGGAGCTCATGCTAAAGTCTATGAGGGAAAGCTCTCGATGATTCTTATTATTGTGTCTGGTTTTATTGGTGCTTGTAAGGAGCCAGTAATGGTGATAGTCACTGAGCTGCTATTAGGAGGAACATTGCGTAAGTATTTGCTTAACATGCGTCCCAAATGCTTGGATAGACATGTTGCCATTGGTTTTGCACTTGATATTGCACGTGCTATGGAGTGCCTGCATTCCCATGGGATCATCCACCGTGATCTTAAACCTGATAACTTGCTGTTGACTGAAGACCAGAAAACAGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAATCATTAACCGAGATGATGACTGCTGAAACAGGAACTTACCGCTGGATGGCTCCAGAGAATGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTAGCTCTAGTTCTTACTTCATGTTGGCAAGAGGACCCAAATGCCAGACCCAACTTCACCCAGATAATCCAAATGCTCCTAAATTATCTTTACACTGTTGCACCTCTTGAACCCATGATTCCTTCAAGAATATTCAGTTCTGAGAACACTGTCTTGCCACCAGAGTCTCCAGGAACTAGCTCATTAATGGCAAAACGTGATGACACAGGGGATACACCAAGAGCGAAGGACGAAGTCAAACCTAATGGTTTTCTTTGCTGCTTTAGTCAGTGTTATTAA 798 0.4336 MESGVRFYSVDEFRLDPKWLIDPKHLFVGPQIGEGAHAKVYEGKLSMILIIVSGFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDRHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPENVRPSAENLPEELALVLTSCWQEDPNARPNFTQIIQMLLNYLYTVAPLEPMIPSRIFSSENTVLPPESPGTSSLMAKRDDTGDTPRAKDEVKPNGFLCCFSQCY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00898 265 MobiDBLite consensus disorder prediction 223 249 - -
Vian4g00898 265 MobiDBLite consensus disorder prediction 223 239 - -
Vian4g00898 265 Gene3D Transferase(Phosphotransferase) domain 1 166 207 - -
Vian4g00898 265 Coils Coil 265 265 - -
Vian4g00898 265 SUPERFAMILY Protein kinase-like (PK-like) 17 227 IPR011009 -
Vian4g00898 265 SMART serkin_6 26 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00898 265 ProSiteProfiles Protein kinase domain profile. 1 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00898 265 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 161 - -
Vian4g00898 265 Pfam Protein kinase domain 61 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00898 265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Vian4g00898 265 Gene3D Transferase(Phosphotransferase) domain 1 24 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00898 Vian-Chr4 12734875 12737843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00898 9 265 MAP Kinase Kinase Kinase AT5G50180 56.686 1.32e-127 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian4g00898 Pkinase 4.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00898 - - gmx:100796593 464.922