Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00894 ATGACGACGCGGTTCAAGAAGAACAGGAAGAAGAGGGGTCACGTGAGCGCCGGTCACGGGCGTATCGGGAAGCACCGGAAGCACCCCGGAGGGCGAGGTAACGCCGGTGGCATGCACCACCACCGGATCCTCTTCGACAAGTACCATCCAGGGTACTTCGGGAAGGTCGGAATGCGGTACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATCCTTAACATCGACAAGCTATGGTCCCTTGTCCCTCAGCAAGTTAAGGACCAAGCCTCCAAGGACAACAAAGCGCCTCTCATCGACGTCACGCGGTTCGGCTACTTCAAGCTTTTGGGGAAGGGCGTTCTGCCGGAGAACCAACCCCTTGTCGTCAAGGCCAAGCTCGTCTCCAAGATCGCCGAGAAGAAAATCAAGGAGGCTGGAGGCGCTGTTGTTCTCACCGCTTGA 444 0.5766 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPILNIDKLWSLVPQQVKDQASKDNKAPLIDVTRFGYFKLLGKGVLPENQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00894 147 FunFam 60S ribosomal protein L27a 58 147 - -
Vian4g00894 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Vian4g00894 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vian4g00894 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vian4g00894 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Vian4g00894 147 Gene3D - 58 147 - -
Vian4g00894 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Vian4g00894 147 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00894 Vian-Chr4 12659117 12659560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00894 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.395 3.32e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00894 K02900 - gmx:100802235 291.197