Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00891 ATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGCCTTCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCTCAGTTACCAGGGAGAACTGATAATGAGATTAAGAACTTTTGGAATTCTTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCTACACACAAGCCTCTTGTCAGTGCTGAAGATAACATAATAAAGGAAGAGAAGGACACCATAGAGACACCGTCTGTGTTGTTACCAGCGTCTCAAGGGATTTTAGTCTCCTCACAGGATTCACCGCTTCTAGTGAACAATTCAAATTACTATGATGGTTTGTTCAATGTAACAGAAACTTCAAGGGAAGTTTTCGTGAGCAAAAATGCATTGGACCCTTTGTCCTCCTACTTTGAATTCCAAATGGGTTACGATTCAAGTGTGAACCCAATGAGACAGTTTGATCAGAACCAGGTGGGAACCAATTCAAGCTATGGATTCTCCTCATTGCCGTGTCTGAATAGCTCTGATCACCACGGGAACGTGTCGGTGGCAGAGTTTTCAGACAACAACTCAGCTTCTAAAATCAGTTCTTTGTTGAAGGAAAGTTCAAGCAATAGCTCTGGCATGAGTGTTTATCCAGGGGCCGGCTGTCAAATGATGGAAAATGCCGGCTTCTCATCATGGGAATGTGACAATAAAATTGATCCTTTGTTACAGTTTCAAGTCAATGTGGTAAAATCTCAAGAGTTCAAGACAAGTTCGTGGCAAGAAGGCCAATTTCTGACTCAGAATTCCATAGATTTCACTACCTATCCGTTAATGTCACTGTCGGAGGATCTAACAGGAGCAAATTTTAATGTGTTCCAGCATATGTGA 864 0.4144 MFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLVSAEDNIIKEEKDTIETPSVLLPASQGILVSSQDSPLLVNNSNYYDGLFNVTETSREVFVSKNALDPLSSYFEFQMGYDSSVNPMRQFDQNQVGTNSSYGFSSLPCLNSSDHHGNVSVAEFSDNNSASKISSLLKESSSNSSGMSVYPGAGCQMMENAGFSSWECDNKIDPLLQFQVNVVKSQEFKTSSWQEGQFLTQNSIDFTTYPLMSLSEDLTGANFNVFQHM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00891 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 48 IPR017930 -
Vian4g00891 287 Pfam Myb-like DNA-binding domain 2 43 IPR001005 -
Vian4g00891 287 Gene3D - 1 75 - -
Vian4g00891 287 CDD SANT 2 41 IPR001005 -
Vian4g00891 287 ProSiteProfiles Myb-like domain profile. 1 44 IPR001005 -
Vian4g00891 287 PANTHER MYB DOMAIN PROTEIN 55 1 215 - -
Vian4g00891 287 SMART sant 2 46 IPR001005 -
Vian4g00891 287 FunFam Transcription factor MYB86 1 72 - -
Vian4g00891 287 SUPERFAMILY Homeodomain-like 2 54 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00891 Vian-Chr4 12575007 12575965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00891 2 97 MYB Transcription Factor Family AT5G26660 58.252 1.11e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g00891 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00891 K09422 - gmx:100799243 418.313