Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00889 ATGGCATCATCGAGCTCCTACAATTCTCCTTGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCATACTTCCCACCGGAAGAGCCTCAGAAGTTCGCGAACGTGCACAAGATATTCGGTGCCAGCAATGTGACGAAGCTTCTGAACGAGCTTCTTCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCAGTTTATGGGTGCGTAGGAGCCATCTCTTTTCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTACAATGACATGCCTTCACCCTCTCTTTCTGTGCCACCAGCAATGACAGCAACAACAATTCAACAAATTCCCCAAAGGTCTTTCAATGCAAGGTTTGGAAATGAAGCAAGTGGGTTTTATAGGCCCTCTCCCACCATCACTTACAACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTCCTGAAGATATCAATGATGGAGGAGGAGAAGGAGGAGGTAATAACTTGTGA 576 0.4774 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDMPSPSLSVPPAMTATTIQQIPQRSFNARFGNEASGFYRPSPTITYNSYPYSLPWTDTSPEDINDGGGEGGGNNL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00889 191 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vian4g00889 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 129 - -
Vian4g00889 191 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vian4g00889 191 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00889 Vian-Chr4 12453908 12454483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00889 1 189 AS2 family AT5G63090 63.636 1.03e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian4g00889 LOB 9.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00889 - - gmx:100800614 313.538