Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00879 ATGGGTATCAATATAAAGGGAGAAATAGAGAGGGTAAATGGGAAGGAACTGAGTTACATTGAATTTGTGGATAGATATATGGAGAAGAACAAACCCGTTGTACTCACTGGGCTAATGGACCATTGGAGAGCTCACACTGATTGGGTCACACTTCATTCCCAACCCAACTTTCAATTTTTCTCAACTCATTTTGGAGCTTCTAAAGTTCAGAAAAGAGAGGAGATGTTGGTCTCCGATTTTATAGCGCGTTGCCTTCTCGAGGAGGCTTCTGCTGTTCAATGTAATAATGAAACTTGTTCAAGTAATGGTGCCTCTGTATCTATACCGTATTTGAAGGATTGGCATTTTGTAAAGTATCCTGAGTATGTAGCATATGAGACTCCAAGGTTCTTTTGTGATGACTGGCTCAATCTGTATCTTGACAACTTCAAAATCCATATTGATTCTGACACACAGCAACCGAATGAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATAGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCTTATAGCTGGTCGTCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGCTATCTGGTTGGAATGCACACAAGATGCTGGTGAAATTATATTTGTTCCCAGCGGATGGGAAGCTAGACAGCTCAGCGGAGCTGGAGGATACGATATCTATAAACCACAACTGGTTCAACGCTTATAACCTTTCCTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGACTACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGGATGAACTTTTATGACTTCTTTACTTTCATGTCATACTTCACCGTGGCCAACTTAGTGTTGCTTCGTTATATAAATAGAAGATATGGAAGTACTACTGGAAGTTCTTCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGACCGCTTCAGAGATGAAACACGTACGTGCTCTAGAAGGAAATCATAATTGCGTTGTGGATATTATCAAAGCATTTGAAGATCCTAGATTTTCCAAATTATGCATGCATGTAGGAAGAACATATGCCATGGTACATGAGCAATCTCACTTGGTCTCTGATTTCGAGAGCTCTACAATGAGTGATTTGGTGGACTTCAGTGATTCGAAATCATACACATCTCAGATCTACACACCTGAAGATCTTATTCAATTTATAGACAATGTAGTTGCAGAAGAGGAGCCATCTGTACTTCGTGACACTTGA 1323 0.4021 MGINIKGEIERVNGKELSYIEFVDRYMEKNKPVVLTGLMDHWRAHTDWVTLHSQPNFQFFSTHFGASKVQKREEMLVSDFIARCLLEEASAVQCNNETCSSNGASVSIPYLKDWHFVKYPEYVAYETPRFFCDDWLNLYLDNFKIHIDSDTQQPNEEICCSDYRFVYIGVKGSWTPLHADVFRSYSWSSNVCGKKRWLFLDPSQLSGWNAHKMLVKLYLFPADGKLDSSAELEDTISINHNWFNAYNLSWVWNLLLRDYNEAKDYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTVANLVLLRYINRRYGSTTGSSSTIAQHLSMNLGCLRKTASEMKHVRALEGNHNCVVDIIKAFEDPRFSKLCMHVGRTYAMVHEQSHLVSDFESSTMSDLVDFSDSKSYTSQIYTPEDLIQFIDNVVAEEEPSVLRDT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00879 440 Pfam Cupin-like domain 21 205 IPR041667 -
Vian4g00879 440 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 231 308 - -
Vian4g00879 440 Gene3D Cupin 3 244 - -
Vian4g00879 440 SUPERFAMILY Clavaminate synthase-like 6 272 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian4g00879 Cupin_8 1.8e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00879 - - gmx:100803814 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00879 4 12245359 12249140 Vian4g00879 4 12245359 12249140 ECH