Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00871 ATGGCTCCACCTCCGCCGATTAAGGCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGCACTTCGTGATAAAGTAGCTTCTCACCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTTGGAGCACCACAAGATATGGCAGACCTATTTGAAGGAATCAAAGAAGAGCACAGTGGGGTGTGTCAGATATCTGAATCTAAATCTTATCATAGCTTCTTGGGTGCTGATCCCGAACTTGATGATTTCATGGTAACGTTTTGCGATTTGCTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTAATGAGGCAACCATGTTCCTCAGCCACATGGAAACTCAGCTTCACTCCATCTGCAACGATCTTGCTGTCTCAGACAACACTCTTCCTCAACCTGCAGTTGGTGGATCATCTGGGAAAGATAGCAAGGAGGGAATTAAGAGAATTGAAAGCAAGAAGACATATGAAGTTGAAGAGGTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTGGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCCTAGCTGAATGGAGTGGTTTGGAGCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGGCATTGGAAAGCATCAGAAGAAATGCAGGTTACAATTTTGGATGGACTCTATGGACCCTTGCACGAGTGA 795 0.4226 MAPPPPIKAVFGKEEDVSKALRDKVASHPLFPHLLHAYIDCHKVGAPQDMADLFEGIKEEHSGVCQISESKSYHSFLGADPELDDFMVTFCDLLVKYKSDLSRPFNEATMFLSHMETQLHSICNDLAVSDNTLPQPAVGGSSGKDSKEGIKRIESKKTYEVEEVKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWSGLEQKQVNNWFINQRKRHWKASEEMQVTILDGLYGPLHE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00871 264 ProSiteProfiles ELK domain profile. 163 183 IPR005539 GO:0003677
Vian4g00871 264 Pfam KNOX1 domain 21 60 IPR005540 GO:0003677|GO:0005634
Vian4g00871 264 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 251 - -
Vian4g00871 264 ProSiteProfiles 'Homeobox' domain profile. 183 246 IPR001356 GO:0003677
Vian4g00871 264 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Vian4g00871 264 Gene3D - 181 253 - -
Vian4g00871 264 SMART HOX_1 185 250 IPR001356 GO:0003677
Vian4g00871 264 SUPERFAMILY Homeodomain-like 185 256 IPR009057 -
Vian4g00871 264 ProSitePatterns 'Homeobox' domain signature. 221 244 IPR017970 GO:0000981|GO:0006355
Vian4g00871 264 Pfam Homeobox KN domain 203 242 IPR008422 GO:0003677|GO:0006355
Vian4g00871 264 CDD homeodomain 199 245 IPR001356 GO:0003677
Vian4g00871 264 Pfam ELK domain 165 184 IPR005539 GO:0003677
Vian4g00871 264 SMART KNOX2_2 73 124 IPR005541 GO:0003677|GO:0005634
Vian4g00871 264 Pfam KNOX2 domain 78 123 IPR005541 GO:0003677|GO:0005634
Vian4g00871 264 SMART ELK_2 163 184 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00871 Vian-Chr4 12058566 12067401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00871 20 256 Homeobox Transcription Factor Family AT1G70510 48.548 7.01e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vian4g00871 KNOX2 4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00871 - - gmx:102662019 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00871 4 12058566 12067401 Vian4g00871 4 12058566 12067401 ECH