Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00858 ATGGGAAAGTTGAAGTCAAGTGTCATTTGTTCAGATTTGGTTCACCGTGGTATTCTATTTTTCCTACTTCTTTTATCACTCTATTCCATTGAACCAGCATCTTGTGCCTCCAGAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTCTTCTTGAAACTGGGTATGTGGGAGTGGGAGAATCAGAGGATGTGCAGACATTTTACTACTTCATTGAGTCAGATAACAACCCCAAGGAAGATCCTCTTCTGCTTTGGCTATCCGGTGGCCCTGGTTGCTCAGGCCTAAGTGCCCTTTTTCTTGAAATAGGTCCACTTGAATTAAAACAGGAGGAGTACAATGGAGGTCCACCCAACTTGATCTTCAGGAATGAATCATGGAACAAGGTTAGTAGCATTATATATGTAGACTTGCCTGTTTTCACAGGCTTTACTTATGCCACAACAGAACTTGCTCCTCAAAGTAGTGGAAAGTTGTTAGCTCGTCAAGCCCATCAATTTCTGAGGAAGTGGTTAATTGGTCATCCAAAATTTGTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCAGTAATTGTTCAAGAAATTGCACAAGGTAATGAGAAAGGGTTTCAACCAAGGATAAATCTCCAGGGGTACCTTTTGGGGAATCCGATGACAACTAGAAGGGACGGAAACTATGGAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATTTGAGTCTCTACAAAAAAATTGTAAAGGAAACTACGTGGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGACTCATTCTATAAGCTTGTATCAGGACTTTCTCATTACAATATTTTGGAACCGTTGTGTGAGTTCGATCGTCAAGCTCATTTGAGAAGATCCCTAATTGAGAAATTCCCTGGAAAGCATTTCTTGAAAACTGATCTCAACTTGCCAGACGTAACATGTCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTAATCATGATGAAGGTTTCAAGTCCGATATTTCAAGCAGCATTGAATACCACGCAAATCTTAGTAGAAAAGGCTATCGTTCATTAATATATAGTGGCGATCATGACATGGTGGTTCCTTTCTTGGGAACTCAAGAATGGATAAGATCTTTAAACTACTCCATTGTTGATGATTGGAGGCCATGGAATTCAAATGGACAAGTTGGAGGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGGTGCGGGACACACAGCTCCGATGTACAAATCGAAAGAATGTTTTGACATGTTCAGCAGATGGATATCTAAGAGGGCTTTGTAG 1422 0.4044 MGKLKSSVICSDLVHRGILFFLLLLSLYSIEPASCASRVKFLPGFEGPLPFLLETGYVGVGESEDVQTFYYFIESDNNPKEDPLLLWLSGGPGCSGLSALFLEIGPLELKQEEYNGGPPNLIFRNESWNKVSSIIYVDLPVFTGFTYATTELAPQSSGKLLARQAHQFLRKWLIGHPKFVSNEVYIAGDSYSGIPVPVIVQEIAQGNEKGFQPRINLQGYLLGNPMTTRRDGNYGIPFAHGMALISDELFESLQKNCKGNYVDVDSENVLCYKDMDSFYKLVSGLSHYNILEPLCEFDRQAHLRRSLIEKFPGKHFLKTDLNLPDVTCPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCNHDEGFKSDISSSIEYHANLSRKGYRSLIYSGDHDMVVPFLGTQEWIRSLNYSIVDDWRPWNSNGQVGGYTRTYSNQMTFATVKGAGHTAPMYKSKECFDMFSRWISKRAL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00858 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Vian4g00858 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185|GO:0006508
Vian4g00858 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vian4g00858 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vian4g00858 473 FunFam Carboxypeptidase 375 470 - -
Vian4g00858 473 FunFam Carboxypeptidase 327 472 - -
Vian4g00858 473 Pfam Serine carboxypeptidase 43 469 IPR001563 GO:0004185|GO:0006508
Vian4g00858 473 Gene3D alpha/beta hydrolase 33 306 IPR029058 -
Vian4g00858 473 SUPERFAMILY alpha/beta-Hydrolases 39 470 IPR029058 -
Vian4g00858 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 456 IPR001563 GO:0004185|GO:0006508
Vian4g00858 473 Gene3D - 328 472 - -
Vian4g00858 473 FunFam Serine carboxypeptidase-like 11 33 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00858 Vian-Chr4 11890458 11899881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00858 33 62 Calmodulin-binding Proteins AT2G22960 70.000 1.97e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00858 K16296 - gmx:100792006 654.44