Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00857 ATGGAACAAGAACTTGCTGCTCAAAGTAGTGATACGTTGTTAGCTCGTCAAGCCCATCAATTTCTAAGGAAGTGGTTAATTGATCATCCAAAATTTTTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCCTTCCAGCAATTGTTCAAGAAATTGCACAAGGTAATGAGAAAGGGTTTCAACCAAGGATAAATCTCCAGGGATACCTTTTGGGGAATCCAATAACAACTAGAAGGGAGAATGACGATGGAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATATGAGTCCCTACAAAAAAATTGTAAAGGAAACTACGTGGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGAGTTATTCAATAAGCTTGTATCAGGACTTTCTGGTTACAATATTTTGGAGCCGTTGTGTGAGTTCGATCATTCTACACCTCCTTTGAAAAGATCCCTAATTGAGAAATTTCCTGGCAAGCATTTCTTGAAAACTGATCTCAAATTGCCAGACGTAACATGTCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTCATCGTGATGAACGTTTCATGTACGATATTTCAAGCAGCGTTGAATATCACACAAATCTTAGTATAAAAGGCTATCGTTCACTAATATACAGTGGCGATCATGACATGATAGCTCCTTTCTTGGGAACTCAAGAATGGATAAAATCTTTAAACTACTCTATTGTTGATGATTGGAGGCCATGGAATTCAAATGGACAAGTTGGAGGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGGTGCGGGACACACAGCTCCGATGTACAAATCGAAAGAATGTTTTGACATGTTCAGCAGATGGATATCTAAGAGAGCTTTGTAG 984 0.3831 MEQELAAQSSDTLLARQAHQFLRKWLIDHPKFLSNEVYIAGDSYSGIPLPAIVQEIAQGNEKGFQPRINLQGYLLGNPITTRRENDDGIPFAHGMALISDELYESLQKNCKGNYVDVDSENVLCYKDMELFNKLVSGLSGYNILEPLCEFDHSTPPLKRSLIEKFPGKHFLKTDLKLPDVTCPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCHRDERFMYDISSSVEYHTNLSIKGYRSLIYSGDHDMIAPFLGTQEWIKSLNYSIVDDWRPWNSNGQVGGYTRTYSNQMTFATVKGAGHTAPMYKSKECFDMFSRWISKRAL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00857 327 Pfam Serine carboxypeptidase 7 323 IPR001563 GO:0004185|GO:0006508
Vian4g00857 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 25 50 IPR001563 GO:0004185|GO:0006508
Vian4g00857 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 294 307 IPR001563 GO:0004185|GO:0006508
Vian4g00857 327 FunFam Carboxypeptidase 181 326 - -
Vian4g00857 327 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 310 IPR001563 GO:0004185|GO:0006508
Vian4g00857 327 FunFam Carboxypeptidase 230 324 - -
Vian4g00857 327 Gene3D alpha/beta hydrolase 2 327 IPR029058 -
Vian4g00857 327 SUPERFAMILY alpha/beta-Hydrolases 9 324 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00857 Vian-Chr4 11803560 11813699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00857 189 327 Calmodulin-binding Proteins AT2G22960 62.590 2.85e-59 187