Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00846 ATGGAAGAGTTGAGGATGACAGGAAATGTTACGAACGGTGTTCATGATGAAGGGGAAGGTAATGAGATGAATGTGAACCTTGATTCCCCTTCTAAGGAAACCTCGAGTGCGGTTAAGTCCCCCAGGGGCTCCTCGAGTCCGGGAAAAGGTGAAGGCAATACTGCTAATTTTGGTGTTGATGGGGTGGTTGAACCCTCCATTGAACAGCTTTATGAAAATGTATGTGACATGCAGAGTTCGGATCAGTCACCGTCACGGCAAAGTTTTGGATCTGATGGCGATGAGTCTAGAATCGATTCGGAATTGCGCCATCTAGTTGGAGGACGGATGAGGGAGGTAGAGATAATGGAAGAGGAAGTTGGGGAGGAGAAAGGGCAAGAAAGGAGTTCAAGTAGTGAAATATCTTCCGGATTGGATGGCTTGACCACTGATAAGAAATTGGATCAGGTGAATGAGATTCAGGAGGTTCAGCCTGCACCTACTAGTTCTGGTTCCTCAGTAAAGTCTGTTAAGGCATCGAGTTCACGGGTGGGATCTGATACGTCGCCCAAATCAACAGCCAAAGGAAAAAGTCCTGCCCCAAAACCTCCTATGCAAAGAAAGAATGGTAGACCTTCGAGGAAACAAAGTAGTGGTGTTACTGGCGTGAAGAATTTGAAGAATTCTCCTTCGGGTAATAAGTCAGTGTCACAAAACCGTATTGAGAAAAGGGCCGAGTCCGCATTAGACAGACCTGAGAGGGCACCGATATTACTAAAACAAGCAAGAGATATGATTTCATTCGGGGATAATCCTAATAGGGCTCTTGACTTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGGTGATGAGAAACCGAGCTTAGAGCTGGTTATGTGCTTACATGTTATTTCAGCAATATATTGCAGCTTGGGTCAATATGGTGAGGCAATCCCAATTCTTGAGCGGTCAATTGAGATTCCTGTTATTGGGGAAAGTCAGGAACATGCCCTTGCTAAATTTGCTGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTAAGTGCTATACCACTGGATTAGAAGTACAGAAGCAGATTTTGGGGGAGACAGACCCAAGAGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCTAATGTTCAGGCTTTGCGATTTGATGAAGCAGAGAGGCTTTGTCAGATGGCTCTAGACATTCATAAAGCAAATAATCCAGCTCCGTCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTGTATGTGATACAAAGGGAAATCACGAAGCTGCTCTTGAGCATCTTGTTCTAGCCAGCATGGCAATGGTCGCTAATGGCCAGGAAGGGGATGTGGCTTCTGTTGATTGCAGCATTGGAGATGCATACTTGTCTTTGTCTCGATATGATGAAGCTATCTTTGCGTATCAGAAAGCATTAACAGCTTTCAAGACCAACAAAGGAGAGAATCATCCAGCAGTGGGATTTGTCTTTGTGCGTCTGGCTGACTTGTATAACAGGATAGGAAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAAAATATACGAGAATCCAATTCCTGGAGTTCCTCTAGAGGAGATTGCTAGTGGTCTTACAAATATTTCAACTATCTATGAATCTATGAATGAACTTGAACGGGCTCTCAAGTTACTGCAGAAAGCACTGGAGATATACAATGATGTCCCTGGTCAGCAAAGCACAATAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGGAACTTTTCTGAATCTTACGAAACTTTGAAGACGGCTATTTCAAAACTTCGTGCTATTGGAGAAAAGAAATCATCTTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTCCAACGGTATGCCTTAAGTGAGGCTACAGAATTATTTGAAGAAGCAAAGAGTATTTTGGAACAAGAATATGGTCCGTATCACCCAGAAACACTTGGGGTATGCAGTAATCTTGCTGGCACATACGATGCAATTGGCAGAATGGATGATGCAATTCAAATTCTGGAGTACGTTGTAAGCGCGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAAAAGGTTGGGTGAGTTGTTGAAGGAAGCAGGAAGAGTTCGGAGCAGAAAAAACAGATCACTTGAGAACCTTCTTGATGGCAATGCTCACACTGTAAACAATGTTGTCATCAGGGCCTGA 2262 0.4403 MEELRMTGNVTNGVHDEGEGNEMNVNLDSPSKETSSAVKSPRGSSSPGKGEGNTANFGVDGVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEEKGQERSSSSEISSGLDGLTTDKKLDQVNEIQEVQPAPTSSGSSVKSVKASSSRVGSDTSPKSTAKGKSPAPKPPMQRKNGRPSRKQSSGVTGVKNLKNSPSGNKSVSQNRIEKRAESALDRPERAPILLKQARDMISFGDNPNRALDLALQAMKLFEKFGDEKPSLELVMCLHVISAIYCSLGQYGEAIPILERSIEIPVIGESQEHALAKFAGHMQLGDTYAMLGQLENSIKCYTTGLEVQKQILGETDPRVGETCRYVAEANVQALRFDEAERLCQMALDIHKANNPAPSLEEAADRRLMGLVCDTKGNHEAALEHLVLASMAMVANGQEGDVASVDCSIGDAYLSLSRYDEAIFAYQKALTAFKTNKGENHPAVGFVFVRLADLYNRIGKIRESKSYCESALKIYENPIPGVPLEEIASGLTNISTIYESMNELERALKLLQKALEIYNDVPGQQSTIAGIEAQMGVMYYMLGNFSESYETLKTAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQEYGPYHPETLGVCSNLAGTYDAIGRMDDAIQILEYVVSAREEKLGTANPDVDDEKKRLGELLKEAGRVRSRKNRSLENLLDGNAHTVNNVVIRA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00846 753 Gene3D Tetratricopeptide repeat domain 228 445 IPR011990 GO:0005515
Vian4g00846 753 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Vian4g00846 753 Pfam Tetratricopeptide repeat 544 579 - -
Vian4g00846 753 Pfam Tetratricopeptide repeat 292 321 - -
Vian4g00846 753 SUPERFAMILY TPR-like 459 533 IPR011990 GO:0005515
Vian4g00846 753 MobiDBLite consensus disorder prediction 24 52 - -
Vian4g00846 753 Gene3D Tetratricopeptide repeat domain 638 739 IPR011990 GO:0005515
Vian4g00846 753 MobiDBLite consensus disorder prediction 92 129 - -
Vian4g00846 753 SUPERFAMILY TPR-like 260 367 IPR011990 GO:0005515
Vian4g00846 753 Pfam Tetratricopeptide repeat 339 366 IPR019734 GO:0005515
Vian4g00846 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 56 743 - -
Vian4g00846 753 MobiDBLite consensus disorder prediction 154 188 - -
Vian4g00846 753 SMART tpr_5 544 577 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 585 618 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 501 534 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 459 492 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 627 660 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 669 702 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 377 410 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 335 368 IPR019734 GO:0005515
Vian4g00846 753 SMART tpr_5 292 325 IPR019734 GO:0005515
Vian4g00846 753 MobiDBLite consensus disorder prediction 203 231 - -
Vian4g00846 753 Gene3D Tetratricopeptide repeat domain 446 625 IPR011990 GO:0005515
Vian4g00846 753 Coils Coil 550 577 - -
Vian4g00846 753 MobiDBLite consensus disorder prediction 1 242 - -
Vian4g00846 753 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Vian4g00846 753 Pfam Tetratricopeptide repeat 628 696 - -
Vian4g00846 753 Pfam Tetratricopeptide repeat 457 533 - -
Vian4g00846 753 MobiDBLite consensus disorder prediction 72 91 - -
Vian4g00846 753 SUPERFAMILY TPR-like 585 727 IPR011990 GO:0005515
Vian4g00846 753 SUPERFAMILY TPR-like 338 613 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00846 Vian-Chr4 11433576 11436457 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00846 - - gmx:100783201 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01186 1 12727560 12735428 Vian4g00846 4 11433576 11436457 ECH
Vian4g00846 4 11433576 11436457 Vian4g00846 4 11433576 11436457 ECH
Vian1g01186 1 12727560 12735428 Vian4g00846 4 11433576 11436457 PCT