Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00840 ATGGAGATTGTGATTTCTTTGATCATATTGTTTGTGGGTATAGCGATTTTGGTGGTTATCCATGTCTGCATAGTGGGGAGAGTCTTCAGAGGAAACAATACTGGTGAAGAAGATACTCAACAGGGGCAGAACATGAGTGGAATGAAAAGAATGTTGGGTGAAGACAACATTAGCGACCTCAAAAACCTTCCTTGCTTTGTGTACGAGGAGGCAGCAGCAGTATCAGCAGAGAGAAGAGAGTGCAGCAGTCCTGTCGATTGTGCTGTTTGCTTGGAGAGTTTCAAGGTTGGTGATTTGTGCAGGTTGTTGCCCAATTGCAATCACACCTTCCATCTGCACTGTATAGACTCATGGATTCTCCACACACCCATCTGTCCCATTTGCAGAACATGTGTTCTTTCAGTAACAGAACAGCAAAGTTATGCTTCTGAGAATGTAGAAATTGTAACATCATAG 456 0.432 MEIVISLIILFVGIAILVVIHVCIVGRVFRGNNTGEEDTQQGQNMSGMKRMLGEDNISDLKNLPCFVYEEAAAVSAERRECSSPVDCAVCLESFKVGDLCRLLPNCNHTFHLHCIDSWILHTPICPICRTCVLSVTEQQSYASENVEIVTS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00840 151 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vian4g00840 151 SUPERFAMILY RING/U-box 70 141 - -
Vian4g00840 151 Pfam Ring finger domain 86 129 IPR001841 -
Vian4g00840 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 133 IPR013083 -
Vian4g00840 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 135 - -
Vian4g00840 151 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00840 Vian-Chr4 11232560 11233015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00840 40 133 C3H Transcription Factor Family AT5G06490 35.514 2.83e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00840 - - vum:124841729 303.523