Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00838 ATGAAAAGCGATTTCTATCGACTCGCAGTTTCATCGCACTTCAGCAGTTTCCCCAAATCCTTCTCCCTGAGAAAGAAAGTGCCATGGTGGTACCAAATCCTAAACCCTCGATCCAAGTTCGTGGCCAGATGGAACCGCACCTTCCTCTACGTCTGCATCGCCGCGCTCTTCCTCGACCCTCTCTACTTCTATTTTCCCATCACGGGGGACAAGGCCTGCATGCAGACCGACCTCGTCCTCGGAGTCTTCGTCACCTTCTCCCGCACCGTCGCCGATCTCTTCTTCCTCTTCCACGTCGTCCTCAAGTTCCGCACCGCCTACGTCGCTCCCAACTCTCGCGTTTATGGCCGCAAAGAACTCGTCACAGATCCTCGTGACATCGCCTCACGCTACCTCAAATCTGATTTCATTATCGATCTCCTCGCAACCCTTCCTCTTCCTCAGGTTTTAGGAGCCACGTGGTATGTAGCTTCTATTCAGAGACAATACGAATGTTGGATAATAACATGCAAACAAGAGATGAACAAAACGCATTCTCCATCTTGTACTCCTTCGTTTTTGGACTGTGCTACTCTTGACCACCGAGAAAGGCAAGCTTGGTTCAAACGCACCAGAGTTCTCAGTAATTGCGATGCCCTCAATAACAAAAATGAGTTTCAGTTTGGACTTTTCGCTGATGCTTTCACCGATCACGTTTCCTCATCAAGATTCGTCCAAAAATACTTCTACTGCCTCTGTTCATACGGACAAAATCTTCAGACTAGCACTTACAGTGGTGAAACATTGTTTTCAAGTTTCATATGCATCGCAGGTCTAATCCTGTTCGCGCATCTCATTGGTAACATGCAGAATTATCTGCAATCTACAACTGCTAGAATTGAAGAGTGGAGACTTAGACAAAAAGATACAGAAGAGTGGATGAATCATCGGCAGCTACCACCAGAACTGCAACAAAGGGTTCGACGGTTTGTTCAATATAAATGGCTGGCCACCAGAGGAGTAGACGAAGAAGCCATTTTGCGTGCTTTGCCCTTGGATCTTCGCCGCCAGATTCAGAGGCATCTCTGTCTCGACATTGTTCGTCGGGTTCCATTTTTCGGGCAAATGGATGACCAGCTTCTGGACGCAATATGCGAGAGGCTGGTGTCGTCACTGAACACGAAGGACTCGTATATCGTGCGAGAAGGCGATCCAGTGAGGGAGATGCTCTTCATCATCAGAGGGCAGGTGGAGAGCTCCACCACCGACGGTGGCAGAACAGGGTTCTATAACTCCATCACCCTCCGCCCGGGGGACTTCTGCGGCGAGGAGTTGCTCACGTGGGCCCTCATGTCCTCCTCCAACCTCAACCTCCCTTCCTCCACGCGCACCGTGAAGTCCATCTCGGAAGTAGAGGCTTTCGCGCTCCGCGCTGAGGACCTAAAATTCGTGTCGAACCAGTTCAAGCGGCTCCACAGCAAGAAGCTGCAGCACGCCTTCCGCTACTATTCGCACCAGTGGAGGGCATGGGGGGCCCACTTCATCCAGGCGGCGTGGCGGCGGCATCGCAAGAGGAAGCTGGCGATGGAGCTGCTGGGGAAGGAGAGCCTGTACTACACGAATGTGGTGGAGATAGTAGAGGAGGATGATGATGATTGTGATGCAGGTGATGCTGGAGGTGGTGCGGGTGAGAGTTCGAGTGGTCCCAGCGTGGGTTTTCAGAATCTTGGGGCTACCGTTTTGGCTTCTAAATTCGCTGCGAACACCAGAAAGGGAAAGATTAAGACGGTGAAAATTAATCTTCCTGATTCTGATAGTTTGAAGATGCCCAAGATGTTCAAGCCTACGGAACCCGATTTCTCCACTTTCCATGATTAA 1857 0.5078 MKSDFYRLAVSSHFSSFPKSFSLRKKVPWWYQILNPRSKFVARWNRTFLYVCIAALFLDPLYFYFPITGDKACMQTDLVLGVFVTFSRTVADLFFLFHVVLKFRTAYVAPNSRVYGRKELVTDPRDIASRYLKSDFIIDLLATLPLPQVLGATWYVASIQRQYECWIITCKQEMNKTHSPSCTPSFLDCATLDHRERQAWFKRTRVLSNCDALNNKNEFQFGLFADAFTDHVSSSRFVQKYFYCLCSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARIEEWRLRQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGQVESSTTDGGRTGFYNSITLRPGDFCGEELLTWALMSSSNLNLPSSTRTVKSISEVEAFALRAEDLKFVSNQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLGKESLYYTNVVEIVEEDDDDCDAGDAGGGAGESSSGPSVGFQNLGATVLASKFAANTRKGKIKTVKINLPDSDSLKMPKMFKPTEPDFSTFHD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00838 618 SMART cnmp_10 365 493 IPR000595 -
Vian4g00838 618 Gene3D Jelly Rolls 363 483 IPR014710 -
Vian4g00838 618 Gene3D Helix hairpin bin 291 356 - -
Vian4g00838 618 SUPERFAMILY Voltage-gated potassium channels 36 153 - -
Vian4g00838 618 ProSiteProfiles cAMP/cGMP binding motif profile. 365 439 IPR000595 -
Vian4g00838 618 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 149 613 - -
Vian4g00838 618 Pfam Cyclic nucleotide-binding domain 388 475 IPR000595 -
Vian4g00838 618 FunFam Cyclic nucleotide-gated ion channel 1 363 481 - -
Vian4g00838 618 Pfam Ion transport protein 44 152 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian4g00838 618 CDD CAP_ED 365 496 IPR000595 -
Vian4g00838 618 MobiDBLite consensus disorder prediction 596 618 - -
Vian4g00838 618 SUPERFAMILY cAMP-binding domain-like 295 490 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00838 Vian-Chr4 11208848 11212120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00838 27 614 Ion Channels AT5G14870 53.640 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00838 K05391 - gmx:100785326 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00838 4 11208848 11212120 Vian4g00838 4 11208848 11212120 ECH