Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00835 ATGGTGGCAAGGTCATGCTTAAATTTGCTAGACCTGGTATCAGGGGATATGCTAAATTTCCCTCAAACTCCCAGATCTCTTCCGCGAGTTATGACTGATCCAGTAATCGTTTCTCATGGAGATGGTAAACAAAGTAATGATGATGATTCAGGTGTTAATTCATCTGAACACCGTCGCAAGATAATTATAGTATCAAATTCTCTTCCAGTCAATGGGAAAAGGGATAAGGTATCTGGCAGATGGTGCTTCAGTTATGATGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTTTCTCCTGATGCTGATGTGGTGTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGATAAAGTTTCCCTTCAGTTGATGGAGGAATTCAACTGCTTGCCTACTTTTATTCCTCCAGAACTCTACAAACAATTCCATGATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCTGGCAATCGCCGCTTTGACAGGTCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTACTTCCCACTTTTCTGCGAAAGCGTTGTAGTCGAGTCAAGCTTGGTTTTTTCCTCCACAGTCCATTTCCCTCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTTCACACCTTTGATTATGCTCGCCATTTTCTCTCCTGCTGTAGGCGAATGCTAGGCTTGGAACATGAATCTAAGAGGGGTTACATTGGGCTTGAATACTCTGGTCGCACAGTATTCATTAAAATTTTGCCTGCTGGGATTCACATGGGTCGACTTCAATCTGCCTTAGAGCATCCTTCCTCTTCTGACAAAGTCAGAGAAATCCACCAACAATTTAAGGGAAAAAAACTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAATTCTTGGCCATAGAACAACTCCTGCAACAATATCCAGAAATGCAAGGTGAAATAACACTGATCCAAATTTTAAACCCGCCAAATAGTGCTGACAAAGATGTTGAGAATGCAAAGGAGGAGGCTTACATTACTGCCAAAAAGATAAACGAAAGGTTTGGTTCGGAAAGTTATGAACCTATCATCATCATTGACCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTTCGGGATGGTTTGAATTTGGTTCCATACAAGTACACTGTTTGTAGGCAGGGAAGTTCTAAAGTGGATGAAACCTTAGAAATTGCTTCTGACTCCCCGCGTGCAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGAGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCCGAAGCACTAAATTTGGCAATCACAATGCCCGATGGAGAGAAGCAACTTCGACATGAGAAGCACTACAGATACGTTAGTTCACATGATGTGGCCTACTGGGCTCGAAGCTTTGAGCAAGATCTAGTGTTTTCATGCAAGGATCACTATAGGAACCGTTGCTGGGGCATTGGCTTTGGTCTCAACTTCAGAATTTTGTCTCTGTCTCCTAGTTTCAGGAGGCTATCCATAGATCACATTGTCCCTGCATATAAAAGGAGCAGTTGCAGGGCAATCTTTTTGGATTATGATGGCACAGTTGTACCTCAAGCATCCATCGTGAAAGCCCCCAGTCCTGAAGTCATATCCGTGCTAAATAATCTTTGCAGTGATGTTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAAACTTCATTGAGTGAATGGTTTGATCAGTGCGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTAA 1989 0.4153 MVARSCLNLLDLVSGDMLNFPQTPRSLPRVMTDPVIVSHGDGKQSNDDDSGVNSSEHRRKIIIVSNSLPVNGKRDKVSGRWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDASEQDKVSLQLMEEFNCLPTFIPPELYKQFHDGFCKQHLWPLFHYMLPMYPGNRRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVKLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYSGRTVFIKILPAGIHMGRLQSALEHPSSSDKVREIHQQFKGKKLILGVDDMDIFKGVSLKFLAIEQLLQQYPEMQGEITLIQILNPPNSADKDVENAKEEAYITAKKINERFGSESYEPIIIIDRHVPFYEKAAYYALAECCIVNAVRDGLNLVPYKYTVCRQGSSKVDETLEIASDSPRASALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVFSCKDHYRNRCWGIGFGLNFRILSLSPSFRRLSIDHIVPAYKRSSCRAIFLDYDGTVVPQASIVKAPSPEVISVLNNLCSDVNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00835 662 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Vian4g00835 662 SUPERFAMILY HAD-like 591 662 IPR036412 -
Vian4g00835 662 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Vian4g00835 662 Gene3D - 590 662 IPR023214 -
Vian4g00835 662 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 662 IPR001830 GO:0003824|GO:0005992
Vian4g00835 662 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Vian4g00835 662 Gene3D Glycogen Phosphorylase B; 52 311 - -
Vian4g00835 662 MobiDBLite consensus disorder prediction 35 55 - -
Vian4g00835 662 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
Vian4g00835 662 Gene3D Glycogen Phosphorylase B; 312 528 - -
Vian4g00835 662 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Vian4g00835 662 Pfam Trehalose-phosphatase 594 662 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00835 Vian-Chr4 11147589 11149577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00835 1 662 Trehalose Biosynthesis Gene Families AT1G23870 67.572 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00835 K16055 - gmx:100812031 1276.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00835 4 11147589 11149577 Vian4g00835 4 11147589 11149577 ECH
Vian1g00693 1 7023725 7026555 Vian4g00835 4 11147589 11149577 PCT