Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00829 ATGAGTGTAAAACTCATCTGGGTATTCTTCAATGCCATCTTTTTGTTTCTTCTAGTGGCCAATTCAGAAGAAGAAGGGACGATCAAGGCCCTGGTCACATTCATGGATAAATTGGCACCAGGGTATGTACCAACAGACCCTTCGTGGGGTTGGAACCTTTCATCAGATCCCTGCATTGATAAGTGGTACGGTGTGAAGTGCCATTCAGATAACAAATACGTTATGAGTGTGACTCTTGAGAAGTTCAATTTTGGTGGAGGTTTTGACGCCGGTTCTCTTTGCATTACAAAGTCTCTTCAAATGCTTAGCCTGAAGGACAACGATTTACATGATTCGATACCAGAGGATATAGGAAACTGCAAGTCATTGACTCACTTGTTTTTAAGTGGGAACCAATTCTCTGGGGACCTTCCTATTTCTATTGGCAATCTAAGTAACATAATACGGCTTCATATTTCGGATAACAAGTTAACTGGAGAGCTACCTAAAATGGTGCATGTTTCAAGTTTGATATCCTTCGTTGCTCAAAACAACAACTTCACTGGGGAGATTCCTAGTTTTGACTTCTCCAACCTTGAAGGCTTTAATGTCTCTAATAACAATTTACATGGTCCAGTTCCTGATGTCGGAGGTAAATTCCATGCAGACAGCTTTACTGGGAATCCTAACTTATGTGGGGAGCCACTTTCAAATGCATGTCCTCCTCCTCCTCCTCCTCCTCCTCCATCACCACCACCACATGAAAAGGACAAAAACTCGTTCCCTAATGATTTGTTCATTTATTCAGGTTACTTAGTCCTTGGTTTGATTACGCTGATTTTCTTGACCTTTAAACTGTTATGCAAGTTCAAGACCAAAGAAAAAGTGTTGGATGTTGAAAAGAAGGAAAAGGAAGAAGAAAGTGTTGGTGTTGTTGGCATGGCTAGTGAAATATCCCATTCCAATGGATCAAAGAAGTACATTGGGATCAGATCCGAGTATTCATTGACATCTTTGGAAAGTGGGATGACAACATCAGGTCTTGTTCTTCTTTCAAGTCGAACCCTTAGAGGATTGCAATTTGAGGACTTGCTTGGTGCTCCTGCCGAATTGATTAGAAGGGGAAAGCATGGAAGCCTCTACAAGGTTATGCTCGATAATGGGGTGCAGTTGGCAGTGAAGAGGATTAAGGATTGGGGGATTTCTAAGCAAGATTTTCAGACAAGGATGAATTTGATAGCCCAAGCCAAGCATCCACGCGTATTGCCACCTGTTGCATATTATTGTTCTCAGCAAGAGAAGCTCCTAGCATATGAATATATGCAGAATGGTAGTCTCTTCATGTTGCTCTATGCTGGATCTGAAAGTGGCCTCATGTTTGACTGGGGAAGAAGACTAAATGTTGCTGCTAAGATAGTTTCGGCTTTGACATATATGCATGAGGAGTTTGTTGATAATGGAATAGCACATGGTAACTTAAAGTCAAATAACATTTTGTTTGACAAGAATATGGATCCATGCATAAGCGAATATGGCTTAATGATGGCAGAAAATTATGATGAGTTTGTCATTTCGCATAACAAAGGCATCAAAAGCAAAGATCTAATTGCAGCCACCTTCAAAGCTGATGTGTATGCCTTGGGTATGATACTTCTGGAGCTGTTGACAGGGAAAGTGATTAAAAATGATGGATTTGATCTAGTTAAATGGGTGGATTCAGTTGTCAGAGAGGAATGGACCATTGAAGTTTTTGACAAGTCCCTAATCTCACAGGGTGCTTCGGAAGAGAGGATGATGAATCTGTTGCAGGTAGCATTAAAATGCTTAAATCCATCTCCAAATGACAGGCCAAGCATGAGCCAAGTTGCAGTGATGACAAATGCTTTGATAGAGGAGGAAGAAAAATCCATATCCTTTGACACATGA 1905 0.4089 MSVKLIWVFFNAIFLFLLVANSEEEGTIKALVTFMDKLAPGYVPTDPSWGWNLSSDPCIDKWYGVKCHSDNKYVMSVTLEKFNFGGGFDAGSLCITKSLQMLSLKDNDLHDSIPEDIGNCKSLTHLFLSGNQFSGDLPISIGNLSNIIRLHISDNKLTGELPKMVHVSSLISFVAQNNNFTGEIPSFDFSNLEGFNVSNNNLHGPVPDVGGKFHADSFTGNPNLCGEPLSNACPPPPPPPPPSPPPHEKDKNSFPNDLFIYSGYLVLGLITLIFLTFKLLCKFKTKEKVLDVEKKEKEEESVGVVGMASEISHSNGSKKYIGIRSEYSLTSLESGMTTSGLVLLSSRTLRGLQFEDLLGAPAELIRRGKHGSLYKVMLDNGVQLAVKRIKDWGISKQDFQTRMNLIAQAKHPRVLPPVAYYCSQQEKLLAYEYMQNGSLFMLLYAGSESGLMFDWGRRLNVAAKIVSALTYMHEEFVDNGIAHGNLKSNNILFDKNMDPCISEYGLMMAENYDEFVISHNKGIKSKDLIAATFKADVYALGMILLELLTGKVIKNDGFDLVKWVDSVVREEWTIEVFDKSLISQGASEERMMNLLQVALKCLNPSPNDRPSMSQVAVMTNALIEEEEKSISFDT 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00829 634 FunFam Leucine-rich repeat receptor protein kinase EMS1 91 186 - -
Vian4g00829 634 PANTHER OS05G0588300 PROTEIN 8 622 - -
Vian4g00829 634 Gene3D Phosphorylase Kinase; domain 1 348 433 - -
Vian4g00829 634 Gene3D Transferase(Phosphotransferase) domain 1 434 633 - -
Vian4g00829 634 Pfam Protein kinase domain 365 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00829 634 SUPERFAMILY Protein kinase-like (PK-like) 363 617 IPR011009 -
Vian4g00829 634 SUPERFAMILY L domain-like 43 225 - -
Vian4g00829 634 MobiDBLite consensus disorder prediction 226 251 - -
Vian4g00829 634 Gene3D Ribonuclease Inhibitor 190 230 IPR032675 -
Vian4g00829 634 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vian4g00829 634 MobiDBLite consensus disorder prediction 229 249 - -
Vian4g00829 634 ProSiteProfiles Protein kinase domain profile. 359 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00829 Vian-Chr4 10965610 10967726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00829 48 615 Receptor kinase-like Gene Family AT1G48480 32.616 3.51e-91 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian4g00829 Pkinase 1.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00829 - - pvu:PHAVU_009G180700g 1017.3