Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00827 ATGCATGGACGTGGAGGTGAGAAGGGCACTCGGCACATGTGGAAAGCTCCCACACTTGGCAACTCGTCTCTGAACGCCGATGTTTCTTCGTCTTCTTCTTCATCGTCAGTGAAGTCTTTCTTTAAGGACCGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCTTCTGAAGATCGCCCACCATATATTGGTATAATTCGTTATCTGACAATTGGCAAAGATAAAAAATTGAAGTTTGGTGTTAGTTGGCTCTATCGATCAATTGAAGTAAAACTCAGCAAGAGCGTGCCTTTGGAGGCTGCTCCAAACGAAATCTTCTACACCTTCCATAAGGATGAGATTGATGCTGAAGCTCTGCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGGGCAGAACTTCAACCAGGGATTTCTTCATTTTTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATAAACTATTATACAGGAATTGTGTGGAAATGCATGCAACAGTGCAGCCAGGTGGCCGTTCTCCTAAGCCTATGAGTAGTCCAACTTCAACATCTCAGTTAAAATCTGCTTCAGATAGTGTCCAGAATAGTACTTCTTCCTTTCCTTCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGTCAGCCAAGCGAGAACGATCAATAAAAACTGAGGATGGGGATTCTGGTAATTTCAAGCATGATAACATTTTCAAGACAGAGATTGCAAAAATTACTGAGAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAGATTGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTCGTTGCAGCAACAGATAAGTTAGATTGTCTTAGTCAGTTTGTGCAGCAAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGCGACAGTGATAAATCTGCTGAGGAATTTCTGTTGGTATTGCTACGGGCACTTGATAAACTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAAGTCACAAAAACGCTGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGATACATGGAAGAAACGAGTTGAAGCTGAAATGAATATAAATGATGCAAAGTCTGGTTCAGGTACCAATGTCCACTGGCCTGCCAAATCACGTCCTTCTGATGTTAGTCAAGGTGGGAATAGACATTCAGGTGCATCATCAGATGTTGCCATGAAGAGTTCAGTTACCCAGCTTTCTGCTTCCAAGACCACCTCTGTGAAGATTGTCCAGGGAGAGAATATTACTAGATCTGCATCAACATCTGCATTTCCAGGGCCTGCAAAATCAGTGCCGTCACCTGCAGCTGCGACTGCAAATTTAAAAGATGGGCAGCCTCGTATTGTTGCTGTCAATGGAGGTTCTGATCCTCCCATGGCAAATGCAAGGGATGAGAAAAGTTGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGTGACCATGCTAAAACTGGAGGTCACTCAGTAAAGGAAGATGCCAGAAGCTCTACTGCAATGAGTGCCAATAAGATTTCTGGAGGCTCTTCACGGCATCGAAAATCCATTAATGGATTTTCAGGTTCATCTCCATCTGGGGGGCAAAGGGAAACCGGATCAAGCAGGAATTCCTCCATGCACAAAAATTTAACTTCAGAAAAAATATCTCAACCTGGATTAATGGATAAAGCAGTTGATGGAACTTCTCTTGAGGGCAATATTCCAAAGCTGATTGTTAAAATTCCAAATCAAGGTAGAAGTCCTGCACAAAGTGTCAGCGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCTTCGTCTCCTGTTCTTCCTGAGAAGCATGATCAGTCTGATCACAGCCCAAAGGAAAAGAGCGACCTTTATCGAGTAAATATTGGTTCAGATATTAATACTGAATCTTGGCAGAGTAATGACTTTAAAGAGGTATTGACTGGCTCTGATGAGGGTGATGGATCACCTGCTGCAGTTACTGATGAAGAGCACTGTCGGACTGGCAATGATTGTAAGAAGGCATTGGAAGTATCAAAAGCTGCTTCATCATCATCTGGAAATGAAAATAAAGCTGGCAATTTGCAGGATGCTTCTTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGGTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATATTGAAATCTGAATTGTTAACTCCAACTGGATCTCCAGAAAGAAACACAGCTGCTGTTGAACAGTCATGCACAGACAATGGTGTTAAGTCCTCTGAAGAAAATCTTGTTCGTGATGAATGTCACTCAAATAATGCTCTTGATGTTGAACATAAGAATCTGGCCTCTGTAACAGGTGATCTAGGGGCAAATGGTGAAAGCGATTCTGATTTTCAAGCTTCAGGAGGAAAAACTGCAAGAGAGCTAAATAAGCGTGTTGATGCATGCAATATGGATTTACAACAGGTTGCTGAAACTACTTTGGAAAGCAAAGGAAAATTAAATGAAAAATCTGGACCTACTCCTCTGGTTGGCCTTGCTGAAAATTCTGTACAAGAAGCTGGAGATGGTGATGGAAGCAAGCAGCTACAGGAGGTTGTTCAGGGAGTCAATGCTGGCGAAATTCATGATAAAATCAATTGTGTTGCTGATGTTGAGGCAGAAGCAGCTAAAAAATTGTCACATACAGCTGCGGAAGTGGATGTTCAGAGTGATAACTATACTGCTGAAGGATCAAATGGCAGTGGACAGACAGTTAAAAATCCTCCTGCTGTACTTGTTCAGTCTGATTTGGCAAGAGGAAAAGATGATAAAGCGCTCCATTCTTCTGGTTATAGTGTTGACAAGGTTCTTAAAGACTTCCCTGAACGGGAATCTGACAAAATTGATGATGTTGATGCTGAGAATCATGTCAATCAGTGTAGAAGTAAAAGAAGTGAGTCTGAAAGTGACACCTTGACCATGCCTGAGAATAGAGGTATATGTTCTATTGTGACTGGTCTTGTTGCTGAACATGTAGAGGAGAATTTAGAAACGAGAGATGTTCGTGACCAACCTTCTAGAGAGGATCTTCCTGAAGATTCACCTAGTGTTCTTTCACAAGAAATTGATAAGCATCTCAATTCTAAAAGGTTGAAATTGACTTCCTCAGAAGCAGAGGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCCATGTCTGCTGCAGCTGTGTCAGATGCGGATGCAAAGGTTGAATTTGATTTAAATGAAGGGCTCAATGCAAATGATGGAAGATGTGAGTTCAACAGCATTGCCAATTCAGGATGTGCACCTTCTGGTCGATTGATCAGTCCTGTTCCATTTCCTGCTTCATCTATGTCTTGTGGTATTCTTGCCCCAGTCACTGTGGCGTCTGCTGCTAAGGGGCACTTTGTGCCTCCCGAAGATTTATTGAGAAGTAAAGGTGAAATTGGTTGGAAGGGATCAGCTGCCACCAGTGCTTTCAGGCCAGCTGAACCCAGGAAAGTTATGGAAATGCCTCTTGGTACATCAGCTACCCCTATTCCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTGAATGTGGCTGATGAAAGAATACTTGATGACATTTCTTGTGCTCGACACACAAATTCTATATCTCTTGCAACTGATAGTCATGATCCTGTATGCAGTAAAATACCTTCACCTGTTCGCAGCTCTGGAGGGCTTGGTCTTGACTTAAACCAAGTGGATGATGCTTCCGACATGGGCATTTGCTTGAACAGTAATCATAAAATTGATGTGCCAATTATGCAGGGGAAATCATCATTGGGTGGTCCACCAATTAGAGAAGTGAATGCCCACAGGGACTTTGATTTGAACAACGGACCTTCTGTGGATGAAATGACCACCGAATCCTCATTGTTCTCTCAGCACTCCCGGAGCAATGTGCCATCTCAATTACCTGTTTCTGGACATAGAATGACTACTGCTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCTCAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCTCCAAATGGGCCACAAAGGTTGTTGACTCCTGCTGCTGGTGGCAACCCATTTGGACCTGATATTTATAGGGCCCCAGTATTGTCATCTTCTCCTGCAGTGTCATATCCATCTGCTCCATTTGAATATCCCGTCTTCCCCTTTAACTCCAGCTTCCCTCTTCCATCAGCTTCTTTTTCTGCTGGGTCAACTACTTACGTATATCCAACATCAGCCAATCGGCTTTGCTTCCCTGCAGTAAATTCACAGTTAATGGGGCCTGCCGGCACAGTTTCATCTCATTACCCCAGGCCCTATGTTGTTGGTCTTCCAGAAGGTAACAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGCTGTTCAGACATGGAGGGGAGAGATGAGAGTTTGCCTCTTCCATCTAGGCAACTTTCTGTTGCTAGTTCACAGGCCTTAGCTGAGGAGCAAGCGAGGATCCAGCTTGCCGGTAGTGTTCGGAAGAGGAAGGAGCCTGATGGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 4848 0.4332 MHGRGGEKGTRHMWKAPTLGNSSLNADVSSSSSSSSVKSFFKDRRKISVGECALFKPSEDRPPYIGIIRYLTIGKDKKLKFGVSWLYRSIEVKLSKSVPLEAAPNEIFYTFHKDEIDAEALLHPCKVAFLPKGAELQPGISSFLCRRVYDIANKCLWWLNDQDYINDCQEEVDKLLYRNCVEMHATVQPGGRSPKPMSSPTSTSQLKSASDSVQNSTSSFPSHIKGRKRERADQGSESAKRERSIKTEDGDSGNFKHDNIFKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDLASRSLLAAVVAATDKLDCLSQFVQQRGLPVFDEWLQEVHKGKIGDSDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRSHKNAEIQRKARGLVDTWKKRVEAEMNINDAKSGSGTNVHWPAKSRPSDVSQGGNRHSGASSDVAMKSSVTQLSASKTTSVKIVQGENITRSASTSAFPGPAKSVPSPAAATANLKDGQPRIVAVNGGSDPPMANARDEKSCSSSQSHNNSQSCSSDHAKTGGHSVKEDARSSTAMSANKISGGSSRHRKSINGFSGSSPSGGQRETGSSRNSSMHKNLTSEKISQPGLMDKAVDGTSLEGNIPKLIVKIPNQGRSPAQSVSAGSFDDPTIMNSRASSPVLPEKHDQSDHSPKEKSDLYRVNIGSDINTESWQSNDFKEVLTGSDEGDGSPAAVTDEEHCRTGNDCKKALEVSKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDGGMNLLASVAAGEILKSELLTPTGSPERNTAAVEQSCTDNGVKSSEENLVRDECHSNNALDVEHKNLASVTGDLGANGESDSDFQASGGKTARELNKRVDACNMDLQQVAETTLESKGKLNEKSGPTPLVGLAENSVQEAGDGDGSKQLQEVVQGVNAGEIHDKINCVADVEAEAAKKLSHTAAEVDVQSDNYTAEGSNGSGQTVKNPPAVLVQSDLARGKDDKALHSSGYSVDKVLKDFPERESDKIDDVDAENHVNQCRSKRSESESDTLTMPENRGICSIVTGLVAEHVEENLETRDVRDQPSREDLPEDSPSVLSQEIDKHLNSKRLKLTSSEAEEAEECTSTTADASSMSAAAVSDADAKVEFDLNEGLNANDGRCEFNSIANSGCAPSGRLISPVPFPASSMSCGILAPVTVASAAKGHFVPPEDLLRSKGEIGWKGSAATSAFRPAEPRKVMEMPLGTSATPIPDAPAGKQSRAPLDIDLNVADERILDDISCARHTNSISLATDSHDPVCSKIPSPVRSSGGLGLDLNQVDDASDMGICLNSNHKIDVPIMQGKSSLGGPPIREVNAHRDFDLNNGPSVDEMTTESSLFSQHSRSNVPSQLPVSGHRMTTAEPGNFSWLPSSGNTYSAVSISSIMPDRGDQPFSIVAPNGPQRLLTPAAGGNPFGPDIYRAPVLSSSPAVSYPSAPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSANRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLPEGNNSGSAETSRKWTRQGLDLNAGPGCSDMEGRDESLPLPSRQLSVASSQALAEEQARIQLAGSVRKRKEPDGGWDGYNQSSWQ 1615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00827 1615 MobiDBLite consensus disorder prediction 702 724 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 550 607 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 632 680 - -
Vian4g00827 1615 Coils Coil 865 885 - -
Vian4g00827 1615 ProSiteProfiles TFIIS N-terminal domain profile. 327 407 IPR017923 -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 192 222 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 635 663 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1113 1128 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1024 1047 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1534 1548 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 795 817 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1096 1112 - -
Vian4g00827 1615 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 417 IPR035441 -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1069 1083 - -
Vian4g00827 1615 Pfam BAH domain 46 153 IPR001025 GO:0003682
Vian4g00827 1615 MobiDBLite consensus disorder prediction 474 618 - -
Vian4g00827 1615 SMART BAH_4 45 160 IPR001025 GO:0003682
Vian4g00827 1615 MobiDBLite consensus disorder prediction 793 817 - -
Vian4g00827 1615 SMART TFS2_5 333 406 IPR003617 GO:0005634
Vian4g00827 1615 MobiDBLite consensus disorder prediction 664 680 - -
Vian4g00827 1615 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 279 408 IPR035441 -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1024 1044 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 187 253 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1533 1615 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 520 542 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1069 1128 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 412 460 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 223 253 - -
Vian4g00827 1615 ProSiteProfiles BAH domain profile. 45 160 IPR001025 GO:0003682
Vian4g00827 1615 MobiDBLite consensus disorder prediction 409 460 - -
Vian4g00827 1615 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1615 - -
Vian4g00827 1615 Pfam TFIIS helical bundle-like domain 355 404 IPR017923 -
Vian4g00827 1615 CDD TFIIS_I 337 405 - -
Vian4g00827 1615 MobiDBLite consensus disorder prediction 1572 1586 - -
Vian4g00827 1615 Gene3D - 26 270 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00827 Vian-Chr4 10929562 10935542 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vian4g00827 BAH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00827 - - gmx:100788512 2577.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00827 4 10929562 10935542 Vian4g00827 4 10929562 10935542 ECH