Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00821 ATGGGTGGCAATGGGAAGCACAGATGGAAAATCTCCTTCCACCGCTCCTCTTCCCAATCCTCCAAGCTCGACCCCAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGCTCCTTAATGTTCGACCCGGTTGTCGTCGCTTCGGGTCAAACCTTTGAACGTCTCGCCGTTCAAGTCTGTAAGGACCTCAACTTCTCCCCCAAACAAGAAGACGGCACCCGGCCCGATTTCTCAACGGTAATCCCTAACTTAGCCCTCAAAACCACAATCCTCAATTGGTGCGATAAATCACGCAGCCAACACCCGCGCGCACCCGATTACGCCTCCCTCGGGGGCCGCGTCAGGCAGGCAATGCTTCTTTCGGTGGGACAAAATCAACAGGAAGAACGACAAGAACGAATTAGGGTTTCCGAAACGGAGCTTCTCAACGCGGTCCCGGATAACCCTCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAAGCCCCCGAGTCAACCACTTCAACTCGGGATCCTCCTCCGAGGAGTCGGTCATCATTCTGCCCAGTCCGGGAACGCCGTTACCGTTTACTGTTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTGCGAGATTGAAATTGAAAACCCTGGCGCGCCGGTTTCGGAGGAAGAGGAAAGAATATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGAAAGAGGAAGGCGTAATCGCGCTGAGGAAGATCACGAGGAGCAAAGTGGAGGCTAGGCTCTTGCTCTGCACGCCGCGGGTGCTACTGGCGCTGCGCGGTTTGATCGCTTCGCGATACGGCGTTGTTCAGGTCAACGCAGTGGCGTCTCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATAGTGAGGTCGGGGTTTGTACCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGATGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTCGGCGCGTTGCAGCCGCTGATACACTCGCTGCGTGCCGAGTCCGATAGGACTCGGCATGACTCGGCGCTCGCGTTGTATCATCTGAGCCTGGTTCAGAGTAACCGAGTGAAGCTGGTGAAACTCGGGGTGGTACCGACGCTTTTGTCCATGGTGGTGGCGGGGAATTTGGCGAGCCAAGTGCTGCTGATTCTTTGCAACCTGGCGATGTGCACGGAGGGGCGCACGGCTATGCTGGACGCGAACGCGGTGGAGTGTCTGGTGGGGCTGTTGAGGACGAACGAGTTGGACTCAGAGGCGATTCGGGAGAATTGCGTGGCAGCGCTGTTTGCGCTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAAAAAACGGGAACAGAGAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGAACTGTGGGCGATGGAGGTGATGATGAAAGTGACGAATTTTACGACACGGTCGGGTTGACGCGGAATCGTTACCGACTTGGTGCTGGCAGGAACCACAACATCCTCAACACGACCACGTTTTAG 1602 0.5549 MGGNGKHRWKISFHRSSSQSSKLDPKLPPKEFTCPISGSLMFDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKSRSQHPRAPDYASLGGRVRQAMLLSVGQNQQEERQERIRVSETELLNAVPDNPPVIFSHAATELSPRVNHFNSGSSSEESVIILPSPGTPLPFTVRPTCFSSSSSCEIEIENPGAPVSEEEERILKKLKSSEVFEKEEGVIALRKITRSKVEARLLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLIHSLRAESDRTRHDSALALYHLSLVQSNRVKLVKLGVVPTLLSMVVAGNLASQVLLILCNLAMCTEGRTAMLDANAVECLVGLLRTNELDSEAIRENCVAALFALSHRSLRFKGLAKDARVVEVLKEVEKTGTERAREKARKVLHMLRTVGDGGDDESDEFYDTVGLTRNRYRLGAGRNHNILNTTTF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00821 533 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Vian4g00821 533 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Vian4g00821 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 101 IPR013083 -
Vian4g00821 533 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Vian4g00821 533 Gene3D - 216 503 IPR011989 -
Vian4g00821 533 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Vian4g00821 533 SMART arm_5 409 452 IPR000225 GO:0005515
Vian4g00821 533 SMART arm_5 288 328 IPR000225 GO:0005515
Vian4g00821 533 SMART arm_5 329 369 IPR000225 GO:0005515
Vian4g00821 533 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g00821 533 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Vian4g00821 533 SUPERFAMILY RING/U-box 14 102 - -
Vian4g00821 533 PANTHER U BOX DOMAIN-CONTAINING 21 492 - -
Vian4g00821 533 SUPERFAMILY ARM repeat 220 492 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00821 Vian-Chr4 10789601 10791202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00821 1 532 U-box Gene Family AT5G65200 55.319 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00821 - - gmx:100784564 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00008 8 114386 116110 Vian4g00821 4 10789601 10791202 ECH
Vian4g00821 4 10789601 10791202 Vian4g00821 4 10789601 10791202 ECH