Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00818 ATGAGGGGTTTTGATGCAACAGTAAAAGCAACAGTGAGACAACCACAACTAGAGCCTCAACAACAAAATGATTCAAGCAATAACACCAACATTGATGATGAAGGATCAAAAAATGTGCAAGGCACCAATACTAAAGTTGGTGCATCAGAAGAAACTAAAGATGACCCCCTCATTGGAGGATCTGAAAATGCACGAGAAGAAGGAAGTGAACAACCTTCTAGCAATGAGGAGGCAACAACCACAAGAGGAGAGGGGCAAGCATCACCTGGCGATGGTCAGTCCCTCCCCGCTGCCTCATTTCTCCAAACCCCTTGTCTGCACCATAATCTTCATTTCGCTACACCACAAGCTTCATTGTTCATTGATTTTCAACTGCTTCGTGTTGGTCTCTCTCTGCTTGGGTGCGAGGTGTCCGTCTTGAACTTCAACGTCAGCTTCGAATTCTCTCTGTTTGATCCGTGGATTTTCTCCGTTAAACCTTTCATCTCTCACCAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTCTTGATCCCTCTAAACGCTCATTTAAACGAGGCCAAATTGTTGGCATATTCTATGGCGTTTCCCAGTATGGATCTACTTTGATGGAAAAGGAGCTTGCAAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTGATAGTAACAGCTCTGGCTATGGGGGAGACTTTGGCCCTTGCCCCAGACCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTCGAAGTGATGGATAGAAAGTCAGGAATAACAGGAGATGTTGGAGAAGAATTGAAAACAGTGGAGGGAACAATTGAGCTTAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAACCTAAGAGTTCCTGCAGGCAAGAGTGTTGCTCTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTTTGTGATTTCCCTTATCCTCAGATTTTTTGATCCAGTATCCGGAAGGGTGTTAGTTGATGAGCCAGCTCTTTTTGCCACATTAATTTATGAAAACATACTCTATGGAAAAGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATTAGTGGTCTTCTTGAGGGCTACTCCACCACAGTAAGTGTTTTTGGGACTGATTCACATACAACAATGATTGATTGGCTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGTAGCAATGCTTGGCCAAGAGATATTTCCTTGGGGAATGGCTCAACGTGGTCTCCAACTTGGAGGACTCAATGCTATTGCTGCATTTACCCAACAAACATGGGGTTAA 1344 0.433 MRGFDATVKATVRQPQLEPQQQNDSSNNTNIDDEGSKNVQGTNTKVGASEETKDDPLIGGSENAREEGSEQPSSNEEATTTRGEGQASPGDGQSLPAASFLQTPCLHHNLHFATPQASLFIDFQLLRVGLSLLGCEVSVLNFNVSFEFSLFDPWIFSVKPFISHQEKVLDLYANELLDPSKRSFKRGQIVGIFYGVSQYGSTLMEKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDVGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVALVGQSGSGKSFVISLILRFFDPVSGRVLVDEPALFATLIYENILYGKEGASDSEVIEAAKLANAHNFISGLLEGYSTTVSVFGTDSHTTMIDWLGVAGWGVGGIEAEVAMLGQEIFPWGMAQRGLQLGGLNAIAAFTQQTWG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00818 447 Gene3D ABC transporter type 1, transmembrane domain 165 262 IPR036640 GO:0005524|GO:0016020
Vian4g00818 447 Pfam Aconitase family (aconitate hydratase) 381 420 IPR001030 -
Vian4g00818 447 Gene3D - 263 336 IPR027417 -
Vian4g00818 447 MobiDBLite consensus disorder prediction 1 96 - -
Vian4g00818 447 Gene3D Aconitase, domain 3 359 422 IPR015931 -
Vian4g00818 447 MobiDBLite consensus disorder prediction 73 96 - -
Vian4g00818 447 SUPERFAMILY Aconitase iron-sulfur domain 385 422 IPR036008 -
Vian4g00818 447 Pfam ABC transporter 292 336 IPR003439 GO:0005524
Vian4g00818 447 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 163 385 IPR039421 -
Vian4g00818 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 388 IPR027417 -
Vian4g00818 447 MobiDBLite consensus disorder prediction 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00818 Vian-Chr4 10761225 10766552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00818 165 384 Calmodulin-binding Proteins AT2G36910 46.718 6.51e-62 216