Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00810 ATGTCTACCTCCTCAACCCACCACACCTATAGCCGAAAGCAGAAATCACTCGGCTTATTGTGTACCAATTTTCTCAGGCTTTACAACAGAGATGGCGTCCGCTTAATTGGTCTCGATGACGCCGCATCGCGATTAGGTGTTGAGAGACGCCGGATCTACGACATCGTCAATGTCCTAGAGAGCGTCGGGGTGCTGGCCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCGATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAAGAGAATCCTGGATCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGACGATGAGGATGAGGAGGAAACTTCTCCCATTGTCAATACTGAAAGTCAGAATGACAAGGAAATTCCTGATTCCACCGCTCTTGGTCTATCTTCTAAGAATGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTTAAGCTTTTTATCTGCTCTAGTATCGAAATGATCTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCTAATACATCAATAATGAGGACTAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCATTTAGATGGTTGGGATGGAGAGGTAAAGCATGGAGTGAATCAGTTGACTTAGCTCACAATTCAAATTTCAACGAGCCAGGGAAAAGAAAGTTTGGAACTGACATCACAAACACAAGTTTTAAAAGGAGCAAAACTGATTTTCTCTTGGATGGCCTCACCTGTAAAATGCAAAATCAACAAGAAAATATCAGTTACAGAGTACAGCTCGACAGAAGCAACTTTGAAAAAGATGCAAAACAAACTTCAAAGGGCTATCAATTTGGTCCTTTCGCTCCAGCTTATGTGCCCAAAGTCGGAACCTCTGAAAATAATAGCGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGATCTATTCTCTCACTACATGGATGCGTGGAAATCATGGTACTCTGAAGTTGCTGAGAAGAAGCCAACGAAAACCTTATAA 1131 0.4271 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNRDGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPIVNTESQNDKEIPDSTALGLSSKNENRREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDLAHNSNFNEPGKRKFGTDITNTSFKRSKTDFLLDGLTCKMQNQQENISYRVQLDRSNFEKDAKQTSKGYQFGPFAPAYVPKVGTSENNSGNQVHDWDSLAQVHRPQYQNQALRDLFSHYMDAWKSWYSEVAEKKPTKTL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00810 376 FunFam E2F transcription factor 8 7 79 - -
Vian4g00810 376 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
Vian4g00810 376 Gene3D - 141 228 IPR036388 -
Vian4g00810 376 Gene3D - 7 79 IPR036388 -
Vian4g00810 376 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Vian4g00810 376 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Vian4g00810 376 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Vian4g00810 376 MobiDBLite consensus disorder prediction 93 144 - -
Vian4g00810 376 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
Vian4g00810 376 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Vian4g00810 376 PANTHER TRANSCRIPTION FACTOR E2F 5 345 IPR015633 GO:0000978|GO:0006357
Vian4g00810 376 FunFam E2F transcription factor-like E2FE 142 228 - -
Vian4g00810 376 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00810 Vian-Chr4 10631209 10637773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00810 7 372 E2F-DP Transcription Factor Family AT3G48160 58.021 1.39e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vian4g00810 E2F_TDP 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00810 K09391 - gmx:100818090 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00810 4 10631209 10637773 Vian4g00810 4 10631209 10637773 ECH
Vian1g01151 1 12370042 12373499 Vian4g00810 4 10631209 10637773 PCT