Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00806 ATGTCGGCCTCCACTCATGCAATTGCAGAGGCTGTGGTTGCCACAGCTGGGGCTATGCTACTTATTGCTGCTGTTTTTGTTTACTTCTTTCACAAATTTGTGATTTCTAGATACCGCCAGAGAAACAAAATTGGAGCAAGTTTGCTTCAAGAATCAGGAGTGAACCTTGAGTATATAAACAAAGTTGGTGGCAATGTGAAGGGATTAATTGTTGAAGAAAATGGGGTTGATGTTCTTTATGTGGTGGACACAGAAAGAAGACCATTGATAACTGGATTCCAAAATAGTATACTCAATCCGAGTTTCGAACATGATGAAGACGAAAAGAGAATAGATATAATGGTCCAAAGGTCCAAACTCTTCAAGCCTGAAATTCCACAGCCATGTCAATCTCCAAGCTTGGTTGTTCATGATAATCATCAAGTACTTAAGCCAGAATCACAAACACCATCAGTTTCAACATCACTAACACCAACACAAAACCTCCCACAATCACCTCAGCCAGCACCTCCACCCCAACCACCACCACCACCATCACCACAATCTTCACCAATTATTCTTGAGAACAAGAAAACTCAACCACCACCACCACCTCCTCCTCCTCCAACTCGTCCTCCACCACCACCACCAGGTCCACCTCCTCTTCCAAAGGCCAGTGGCTTCATTTCGTCACTGAAACCCCCACCTGCACCCAAAGGGAAAACAAACATAAGAAGCACCAAAGAGGGTTTGGCAGGGGAGAGTTCAAGAGAAAAGGTTGCTGGCCAAACAAGGCTGAAGCCTCTACACTGGGATAAGGTTGTAGCAAATGTTGATCATTCAACGGTGTGGGATCAGATCAATGATGGCTCTTTCAGGTTTGATGATGAACTGATGGAGTCACTCTTTGGGTATTCAAGTAGCTATAAAACACAAGAAAGAAACAGAACTCTTTCCACTTTGGCCAAGTCCAATTCAAATGCACCAACTCAAATATTCATTCTTGACCCAAGAAAATCTCAAAACACCGCCATTGTGCTAAGATCACTTGCCATTTCTCGCAAGGGAATCTTGGATGCTGTTCTTGATGGTCAAGGTCTAAGTGTTGAGACGCTTGAAAGACTCACTAAAATAGCTCCCACCCAAGAAGAGGAAGCTAAAATCATCCAATTCAGTGGCAACCCAGATCAGCTTGCTGATGCCGAGTCTTTCCTGCACTACATTCTTAAAGCAGTTCCAACAGCATTCAACCGTTTGAAAGCGATGCTTTTCAGGTCGAGTTATGATTGTGAAGTTCTTCAGCACAAGGAACAACTACAAGCGCTTGAAATGGGTTGCAAGGAACTGAGAACTAGTGGTCTGTTTTTGAAACTCCTTGAGGCCATTCTCAAGGCTGGGAATCGAATGAATGCTGGAACTTCAAGAGGCAACGCACAAGGTTTCAACCTGAGTGCTCTTAGAAAACTTTCTGACGTGAAAAGCACAGATGGGAAGACTAGTTTGCTTCATTTTATAGTAGAACAAGTGGTTCAGTCAGAAGGAAAAAGACAAGCTCTCTATCGCAAGCACAAACTTCACACAAGCAATGTTGAAGCAAACAATGTGAATAGAGCTTATTCATATAGACTGATACAACAAGAGGAAGATAAAGAACACACAATGCTTGGTTTGCAAGTGTTACGTGGGCTAAGTGATGAGTTATCTGAAGCAAAGAAAGCAGCTAGTATTGAGTATCACAATTTTATCACAATGTGTTCCACTCTGAATGCTCATGTTATAGAAATTAGACAGATTGTAACGTGTTGTGGCTACACCAGGAGTGGTGGATTTATCAACGAAATGAAAGGGTTCTTGGAGGAATGTGAGGGAGAACTTGAGGTGGTGAAAGAGGAGCAGACAAGGATCATGGAGCTTGTGAAGAAAACAAACGATTACTATCTAGCAGGAGCATCCAAAGACAACATGGTAAACCCCTTTCAACTGTTTGTTATTGTAAAGAATTTTGTTGACATGGTTGATCAGGCTTGCATAGAACTAAAAAGGAAGTTGGATAAGAAGAATGTGGGAGGAGAAGCTGTGTCAACAACACCACCTTTGTCACCATCAAAGAGGGCACCACTGAGATTCCCTAACTTTGATTTGTATTTTCTGTCAAATGTGTCAGAAACTTCATCTTCTAGCCAGTCAGAAGATGATTTCTGA 2181 0.4232 MSASTHAIAEAVVATAGAMLLIAAVFVYFFHKFVISRYRQRNKIGASLLQESGVNLEYINKVGGNVKGLIVEENGVDVLYVVDTERRPLITGFQNSILNPSFEHDEDEKRIDIMVQRSKLFKPEIPQPCQSPSLVVHDNHQVLKPESQTPSVSTSLTPTQNLPQSPQPAPPPQPPPPPSPQSSPIILENKKTQPPPPPPPPPTRPPPPPPGPPPLPKASGFISSLKPPPAPKGKTNIRSTKEGLAGESSREKVAGQTRLKPLHWDKVVANVDHSTVWDQINDGSFRFDDELMESLFGYSSSYKTQERNRTLSTLAKSNSNAPTQIFILDPRKSQNTAIVLRSLAISRKGILDAVLDGQGLSVETLERLTKIAPTQEEEAKIIQFSGNPDQLADAESFLHYILKAVPTAFNRLKAMLFRSSYDCEVLQHKEQLQALEMGCKELRTSGLFLKLLEAILKAGNRMNAGTSRGNAQGFNLSALRKLSDVKSTDGKTSLLHFIVEQVVQSEGKRQALYRKHKLHTSNVEANNVNRAYSYRLIQQEEDKEHTMLGLQVLRGLSDELSEAKKAASIEYHNFITMCSTLNAHVIEIRQIVTCCGYTRSGGFINEMKGFLEECEGELEVVKEEQTRIMELVKKTNDYYLAGASKDNMVNPFQLFVIVKNFVDMVDQACIELKRKLDKKNVGGEAVSTTPPLSPSKRAPLRFPNFDLYFLSNVSETSSSSQSEDDF 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00806 726 SMART it6_source 249 680 IPR015425 -
Vian4g00806 726 MobiDBLite consensus disorder prediction 145 162 - -
Vian4g00806 726 Coils Coil 604 624 - -
Vian4g00806 726 MobiDBLite consensus disorder prediction 145 255 - -
Vian4g00806 726 ProSiteProfiles Formin homology-2 (FH2) domain profile. 249 691 IPR015425 -
Vian4g00806 726 MobiDBLite consensus disorder prediction 163 183 - -
Vian4g00806 726 Gene3D Formin, FH2 domain 271 684 IPR042201 -
Vian4g00806 726 MobiDBLite consensus disorder prediction 190 217 - -
Vian4g00806 726 PANTHER FORMIN-RELATED 5 695 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian4g00806 726 Pfam Formin Homology 2 Domain 252 665 IPR015425 -
Vian4g00806 726 SUPERFAMILY Formin homology 2 domain (FH2 domain) 205 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00806 Vian-Chr4 10566246 10568620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00806 8 724 FH2 protein (formin) Gene Family AT1G70140 39.783 1.12e-158 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00806 - - gsj:114409782 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00806 4 10566246 10568620 Vian4g00806 4 10566246 10568620 ECH