Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00800 ATGCCTCTCTCCTCCGCCTCCGCCGCAGCCCCTCACTCTGCCTCCTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTCGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAATACGATCACCATCGCGATACCGCCGCCGCCAAAGATGACGCCGTCGCCGCCGGCTACGCCTCCGCCGATGATGCCGCTCCGAACAACTCCGGGAAAAACCGCGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATAACCACCGATTCGGTCTCTACAACCCCGATGGAAGAAGGACAGATTCAGTATCAAGATAATGTGTCTCTTGTGCATCCCATGTACCCTGTTACCCCTGAAGGAAGCAACATGAACGGATTTTCCAAGTTGCCTATGTATTCGAAGGACATTGGTACTGGAGCTATGTCAGCTCAAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAGCAGAATGGGCCTAGTACTAAGCTAGTTTGTACAACAGCCCCTAATATTGTTCCAGATTATAAAGGCTCCACAGCGTCTGATATCACCGCCACCAGTTTAAGTTCACTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCTTCTAGTCAAAGACAAACCTCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAATGGAGATAGCTTCATAACCGTTGCTTAG 894 0.5056 MPLSSASAAAPHSASSAEIMLFGVRVVVDSMRKSVSMNNLSQYDHHRDTAAAKDDAVAAGYASADDAAPNNSGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEEGQIQYQDNVSLVHPMYPVTPEGSNMNGFSKLPMYSKDIGTGAMSAQAGNPMKILTLGQGNVEQNGPSTKLVCTTAPNIVPDYKGSTASDITATSLSSLDPPTLSLGLSLSSSQRQTSSIHSAFHSLSCFNNGDSFITVA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00800 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Vian4g00800 297 SMART sant 80 130 IPR001005 -
Vian4g00800 297 CDD SANT 83 128 IPR001005 -
Vian4g00800 297 PANTHER TRANSCRIPTION FACTOR KUA1 16 216 - -
Vian4g00800 297 Gene3D - 82 134 - -
Vian4g00800 297 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Vian4g00800 297 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Vian4g00800 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Vian4g00800 297 SUPERFAMILY Homeodomain-like 78 132 IPR009057 -
Vian4g00800 297 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Vian4g00800 297 FunFam transcription factor MYB1R1 82 133 - -
Vian4g00800 297 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00800 Vian-Chr4 10487391 10490256 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g00800 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00800 - - gmx:778056 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00800 4 10487391 10490256 Vian4g00800 4 10487391 10490256 ECH
Vian1g00726 1 7448710 7450211 Vian4g00800 4 10487391 10490256 PCT