Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00798 ATGGATCCTCCTCTCATCACTGACTCCACATTCTCCTCTGCTTACACCCTCGCCGATATCTGGCTCGGAACCTCCCCTTTTCCCCCTTCCGACCACCATTTCTCCGAGAATGACTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTGCAGTGTTAAAAATGATGGTTTCAAAGATGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTGTACCTTGTGAGGCACCTAAGCAAGACTATATTCACGTGAGAGCAAGAAGGGGCCAAGCTACCGATAACCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAGATCAGTGAGAGAATGAGGATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCCTAACACAGATGGGTTTCCTTTAAAAGATGTTGGTGGTACTGGAATGGTATTTGGATCACAAGCAGCAACAGGGTATGCTCAGGGATCACATCCTGGATGCCTGCATATGCAGATAGGTGGTGGTTTGAGAGAACATGATTCAGAGGTGTCTCAAGGGAATGAAACATCATTTGATAGGTTTGATTTTCTTCTAAAAAACTAA 702 0.4402 MDPPLITDSTFSSAYTLADIWLGTSPFPPSDHHFSENDSGSNKRMKVEGCSVKNDGFKDEAETSSVSGNKSSEQSTVPCEAPKQDYIHVRARRGQATDNHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSPNTDGFPLKDVGGTGMVFGSQAATGYAQGSHPGCLHMQIGGGLREHDSEVSQGNETSFDRFDFLLKN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00798 233 CDD bHLH_AtBPE_like 85 170 - -
Vian4g00798 233 Gene3D - 92 168 IPR036638 GO:0046983
Vian4g00798 233 MobiDBLite consensus disorder prediction 36 60 - -
Vian4g00798 233 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 198 IPR024097 GO:0006355
Vian4g00798 233 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Vian4g00798 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 165 IPR036638 GO:0046983
Vian4g00798 233 MobiDBLite consensus disorder prediction 61 79 - -
Vian4g00798 233 FunFam Basic helix-loop-helix transcription factor 92 164 - -
Vian4g00798 233 Coils Coil 142 162 - -
Vian4g00798 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Vian4g00798 233 MobiDBLite consensus disorder prediction 32 83 - -
Vian4g00798 233 SMART finulus 101 151 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00798 Vian-Chr4 10471666 10474539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00798 40 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 70.504 6.68e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g00798 HLH 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00798 - - vra:106758689 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00798 4 10471666 10474539 Vian4g00798 4 10471666 10474539 ECH