Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00792 ATGTCCCAAGGATCTCCCCTGCAAGACAACAAAGAACCCTCGCCGGAACCCGATTCGCACAAGGAGGCAGCAACCACCAACACCGCCGCTACTGCCGCCGCCGATGCTGCTCCCCCCGCACCCACCAGGAACCGCCCCTCTCGCGCCTGTACCATTCGCACGGCTGCACGCCTCTATTCGGCGTCGCAGCCGGCCAGGCCCAAGGCTGCAAAGAGGGAGCCTCGCCGCGAGGAGTCGCCCCAGCCGCCGTCGCCGCAGCCGCAGCAATGCGGCAAGATCGTGACGCCGCTGGTGGAACCGCCCCCGCCTGCACAGTTGCCGCGTTACAACCTCCGGTCTATGTGGGAATTGGCTTCAATACTCAATTTTTTAAATCTTTTTAGGCATCTTTTGAATATTTCAGTAGAATTCTCGGCTGAAGAGTTTGAGACGGCTTTGCTCACTCCCAATGACACATTGAGTGATATACATATGCCTTTGCTAAAGGCAATTCCTCCCATTACACGAATGGCACTCTCACGTGATACTTGGATAACCGTATTATGCAGAAAATTAAGAGATTGGTGGCACTGGGTTGCGGATGGGGATCTTCCTATTGTTGCTTCACACGGAGCGGAGATTGAAGTATATAAATCACTTGATCCAGGGGTTCGTGTGGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCAGGAGTTACATTGACAGCTCAATCAAGCATGGCATTCCACTTTCAACATTTCGCAAGGAGCGTATTGGTGGTGATTCGCATGGAGTTTCTTATTGGTATGAAGATGACCAAAATATTGGTCAGAGGTTGTATCGGGAGATAAGGAAAACTGAAGTGGTTCAAATGAAGAAAGGGAAACCAAGAGGTTCCCAGGTTTTTTCTAATACAACCTACCAGTGGGAAACAGTTGCTACCAATTTTGATGAATTTCTGGATGTTTCTGAGAAGCTTTTCACAAGTAAAAACAGAACGGAGGTTTCTGTGGGGAAGAAGGTGAAGATAGACATGCTTCCTGAAATTGAGAAGGTTCACAAGAGAAAGGAGAGATTGATGAAAAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTAGGTGTTGATGGGCTTGCCCTAGGGCGTTCACTACGTGATAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCCATCAACGAGGCAATTAAGATAACCAAACGGAAGCCACCGTCCCCAGAAGCTATACCGAGAAGAGAACCAGGATCAAAACCGGAAGCTTTATCCAATGGTAAATGGAGTGGTCCTTCCCCTTCTTATGACCCTCAAGAACTAAATTTTGGCATGCTGTCTCCAAAATCACCAGACTTCGATGATATGGAGGAAGATAATCAAACTGACATACTGGACTTGGATAGAAGCAATCGACGAAGACAGAAGCCTAAACGGTATTCAGAGAAAGAGTTTGTTGAAGCATTGTCCGATAATGAGGCTGACTATGACAGTGATGATGATATTGTGGGAGAAGCAGTGTATTCTGAAGAGTATCTTCAGAAACGCAAGCAGAGAAGGAAGGCTTCTAGTAGCTCTGGCTCTGAAGGAGACGAAGAATATAATTGGAATGAAGATAACATCGAAGATGAAGAAGAGGACGATGAAGAAGATTCCATGAGTGTCAGTGAGGAGAGTGACAAGCCCCGTAAATTCAAGCGACTGGCAGGCCGAACTAGGAGGGAAACTAAACTAAGGTCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACACAAAAACGTATAAATTACCGGCAGTTAGAGATGTCTGATTCAGAAACCGAGTTCGTTAAACCTGACAAGTCTAATGCAAATGCATCAGATGATCACTCAGATCCTTCTGAGAATGGAGATTATATGATGGAAAGTGAAGATTCAGATGGCAATGACGATGAAGAACAAGAAACCAAAGATGTGGAGCCTGTTACTTACCCTGCAGAAGGGAACAACCAATATCCTGCTGTAGAGGAGAATGAACAAAGCAAAATCCAGCCTCCTGAAAAATCTAGTAGTCCAGGCCAGGAGGAAGTTGAAGGCACCACAAAGCGACGATTCCTTGATTTGAATGAGCTTGCCCCTAGCTCAGGTTTTGATGATGCTCCAAATACAACAAGCAAAGATGAAGGCAATGAAGATTTGTGA 2211 0.46 MSQGSPLQDNKEPSPEPDSHKEAATTNTAATAAADAAPPAPTRNRPSRACTIRTAARLYSASQPARPKAAKREPRREESPQPPSPQPQQCGKIVTPLVEPPPPAQLPRYNLRSMWELASILNFLNLFRHLLNISVEFSAEEFETALLTPNDTLSDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDSSIKHGIPLSTFRKERIGGDSHGVSYWYEDDQNIGQRLYREIRKTEVVQMKKGKPRGSQVFSNTTYQWETVATNFDEFLDVSEKLFTSKNRTEVSVGKKVKIDMLPEIEKVHKRKERLMKKQHRQALLLDNFLGVDGLALGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEAIPRREPGSKPEALSNGKWSGPSPSYDPQELNFGMLSPKSPDFDDMEEDNQTDILDLDRSNRRRQKPKRYSEKEFVEALSDNEADYDSDDDIVGEAVYSEEYLQKRKQRRKASSSSGSEGDEEYNWNEDNIEDEEEDDEEDSMSVSEESDKPRKFKRLAGRTRRETKLRSVGEIQSGLRRSKRATQKRINYRQLEMSDSETEFVKPDKSNANASDDHSDPSENGDYMMESEDSDGNDDEEQETKDVEPVTYPAEGNNQYPAVEENEQSKIQPPEKSSSPGQEEVEGTTKRRFLDLNELAPSSGFDDAPNTTSKDEGNEDL 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00792 736 MobiDBLite consensus disorder prediction 1 101 - -
Vian4g00792 736 Pfam DDT domain 119 164 IPR018501 -
Vian4g00792 736 MobiDBLite consensus disorder prediction 676 699 - -
Vian4g00792 736 PANTHER REMODELING AND SPACING FACTOR 1 43 730 IPR028938 GO:0006355|GO:0031213
Vian4g00792 736 MobiDBLite consensus disorder prediction 609 640 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 405 423 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 516 533 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 497 512 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 405 736 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 538 561 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 469 496 - -
Vian4g00792 736 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00792 Vian-Chr4 10404631 10412563 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vian4g00792 DDT 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00792 - - gmx:100816258 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00733 1 7553705 7561295 Vian4g00792 4 10404631 10412563 PCT