Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00788 ATGGGGAACTGCAACGTGTGTGCGAAAGCTGATGTGGTTGAAGATAATAGCAAGAAGTCGAGCGACGGCAACCGCGCCCGGAAAAAGGATGCGAACCAGAAAAAGCCGAACCCGTTTTCGGACGAACCGGGGCGGTCGGCGACGCCGATCCGCGTTCTGAAGGATGTGATCCCAATGAGCCACAGGACGCGCATAAGCGATAAGTACATATTGGGCCGGGAATTGGGCCGGGGCGAGTTCGGCATCACCTACCTCTGCACGGACCGGGAAACCAAGGAGGCGTTGGCCTGCAAATCGATCTCGAAGAGGAAGCTGCGGACTGCCGTGGACATCGAGGACGTGCGGCGCGAGGTGGCTATCATGTCCACTCTTCCGGAGCATCCCAACGTCGTGAAGCTCAAGGCTACCTACGAGGACAACGAGAACGTGCACCTCGTGATGGAGCTCTGCGAGGGAGGAGAACTTTTCGACAGAATTGTCGCCCGCGGACACTACAGCGAGCGTGCGGCCGCCGCCGTGGCGCGCACCATCGCTGAAGTTGTGAGGATGTGCCATAGCAATGGCGTCATGCACAGAGACCTCAAGCCAGAGAACTTCCTCTTCGCGAATAAGAAGGAGAATTCCGCTCTCAAAGCCATCGATTTTGGCCTCTCCGTGTTCTTCAAACCAGGGGAGAAGTTTGCGGAGATTGTTGGGAGTCCTTACTACATGGCGCCGGAGGTTCTGAAGCGGAATTACGGGCCGGAGGTGGATGTGTGGAGTGCTGGGGTGATTCTTTACATTTTGTTGTGTGGGGTTCCCCCGTTTTGGGCAGAGACTGAGCAAGGTGTGGCGTTGGCGATCTTGAGGGGTGTCATTGACTTCAAGAGGGAACCTTGGCCGCAGATATCGGAGAGTGCCAAGAGCCTTGTGCGCCGAATGTTGGAGCCTGATCCTAAAAAGCGTTTGACAGCTGAACAGGTTCTTGGTATCGGTGTCCGTGAGGGATGCGGCGTAAACATTAGTTTCCTTCTCCGCTTGATTATTGCACCGTCTAATATGACTGCACTTTGCAATAGGGGTTGCTTGGATGAGTTGGTGGAAACTGGGAAGGTGGGGAATTTGGAACGAAAACCGCTTCACATTTTGTTGATAGCGAGGAGAGAATCAATTCTCACTTCTTTGAAGTTGAATAGTGAACATCCCTGGCTGCAAAACGCAAAGAAAGCTCCAAATGTTCCATTGGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAGAGCTCTGCGGGTAATTGCAGAGCATTTATCTGTTGAAGAAGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACATATGAGGAGCTGAAGGCTGGATTGAGGAAAGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCCGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTTACAATTCACTTGCAAAAAATGGAGAACGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAAGATGGGAGTGGTTATATTGAGTCTGGCGAGTTACAAGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTACATGATATCATGCGTGAAGTAGACACTGACAAGGATGGTCGCATTAGTTACGAGGAGTTCGTGGCAATGATGAAGACTGGAACTGACTGGAGAAAAGCGTCCAGGCAATATTCAAGAGAGAGATTCAAGAGTTTGAGCCTAAATTTGATGAAGGATGGCTCGCTTCAGCTTCATGATGGAATTACTGGTCAAGCTGTGGTGGTTTAA 1866 0.4957 MGNCNVCAKADVVEDNSKKSSDGNRARKKDANQKKPNPFSDEPGRSATPIRVLKDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDIEDVRREVAIMSTLPEHPNVVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAAAVARTIAEVVRMCHSNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGEKFAEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISESAKSLVRRMLEPDPKKRLTAEQVLGIGVREGCGVNISFLLRLIIAPSNMTALCNRGCLDELVETGKVGNLERKPLHILLIARRESILTSLKLNSEHPWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIESGELQEALADESGETDADVLHDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGITGQAVVV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00788 621 Gene3D Phosphorylase Kinase; domain 1 70 155 - -
Vian4g00788 621 SUPERFAMILY EF-hand 425 604 IPR011992 -
Vian4g00788 621 CDD EFh 516 578 IPR002048 GO:0005509
Vian4g00788 621 ProSiteProfiles EF-hand calcium-binding domain profile. 548 583 IPR002048 GO:0005509
Vian4g00788 621 ProSiteProfiles Protein kinase domain profile. 69 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00788 621 SMART efh_1 552 580 IPR002048 GO:0005509
Vian4g00788 621 SMART efh_1 516 544 IPR002048 GO:0005509
Vian4g00788 621 SMART efh_1 444 472 IPR002048 GO:0005509
Vian4g00788 621 SMART efh_1 480 508 IPR002048 GO:0005509
Vian4g00788 621 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Vian4g00788 621 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vian4g00788 621 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Vian4g00788 621 ProSitePatterns EF-hand calcium-binding domain. 525 537 IPR018247 -
Vian4g00788 621 MobiDBLite consensus disorder prediction 14 36 - -
Vian4g00788 621 FunFam Calcium-dependent protein kinase 1 71 154 - -
Vian4g00788 621 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 573 - -
Vian4g00788 621 ProSitePatterns EF-hand calcium-binding domain. 561 573 IPR018247 -
Vian4g00788 621 Gene3D Transferase(Phosphotransferase) domain 1 156 326 - -
Vian4g00788 621 FunFam calcium-dependent protein kinase 13 155 327 - -
Vian4g00788 621 Pfam EF-hand domain pair 445 504 IPR002048 GO:0005509
Vian4g00788 621 Pfam EF-hand domain pair 515 578 IPR002048 GO:0005509
Vian4g00788 621 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Vian4g00788 621 SMART serkin_6 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00788 621 MobiDBLite consensus disorder prediction 14 47 - -
Vian4g00788 621 ProSiteProfiles EF-hand calcium-binding domain profile. 512 547 IPR002048 GO:0005509
Vian4g00788 621 FunFam Calcium-dependent protein kinase 7 406 581 - -
Vian4g00788 621 Gene3D - 386 579 - -
Vian4g00788 621 CDD STKc_CAMK 68 322 - -
Vian4g00788 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vian4g00788 621 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Vian4g00788 621 Pfam Protein kinase domain 71 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00788 621 SUPERFAMILY Protein kinase-like (PK-like) 66 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00788 Vian-Chr4 10337392 10341492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00788 1 621 EF-hand Containing Proteins AT1G74740 65.176 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian4g00788 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00788 K13412 - gmx:100809838 751.125