Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00786 ATGGGAGACAAGTCCCAAGTGTTAGAGGCTGTGTTGAAGGAAACTGTAGATTTGGAGAACATTCCCGTTGAGGAGGTTTTCGAGAACCTGAGATGTAGCAAAGAAGGTCTCAGCAGCGAGGCTGCTGAGGAAAGTTCAATATTTGATGCTTTTGATATTTATGCTGTAAAATCTCTTCTTTGCAAAGGATTTGCCTTTTATCTGCGTTTCCCCTCATCGTTTCATTTCTTTTTGTCTTTTGTTGGAAAGGTTCTTCGAGATGGTAGATGGAATGAACAAGATGCCTCAGTCTTGGTTCCTGGTGACATAGTTAGCATTAAACTTGGTGATATTATACCAGCGGATGCTCGTCTACTTGAAGGAGATCCTTTGAAAATTGATCAGTCTGCTCTCACTGGTGAGTCCCTGCCTGTTACGAAGGGCCCTGGTGATGGAGTGTACTCTGGTTCTACCTGTAAACAAGGAGAAATTGAAGCTGTGGTAATTGCCACTGGCGTTCATACTTTCTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGACACTTTCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCCGTGGGGATGTTTATTGAAATTATTGTTATGTATCCCATCCAAGATCGAGAATATCGCCCTGGAATTGATAACCTTCTTGTGCTTCTCATTGGTGGAATCCCAATTGCCATGCCCACGGTTCTCTCAGTGACTATGGCCATTGGTTCTCATAGGCTATCGCAGCAGGGGGCTATCACAAAGAGGATGACAGCTATTGAGGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACAGGGACCTTGACATTAAACAAGCTTACCGTTGACAAAAATCTTATCGAGGTTTTTGCAAAAGGCGTGGATGTGGATACTGTTGTTTTGATGGCTGCTCAAGCTTCAAGACTTGAGAATCAAGATGCAATAGACACTGCCATAGTTGGGATGTTAGCTGATCCAAAAGAGGCTCGTCTTGGTATCAGAGAAGTCCATTTTCTTCCTTTCAATCCCACTGATAAGAGAACGGCATTGACATATATTGATCGTGATGGTAAAATGCATAGAGTAAGCAAAGGTGCACCAGAACAGATCCTTAATCTTGCACACAATAAATCAGACATTGAACGTAGAGTTCATGCAGTTATAGATAAATTTGCAGAGCGTGGTTTACGTACCCTTGCAGTAGCATTCCAGGACGTTCCAGATGGAAAGAAAGAGAGTCCAGGTGGCCCATGGCAGTTTATTGGCCTTTTGCCGCTGTTTGACCCACCTAGGCATGACAGTGCAGAAACAATACGCAGGGCACTTAACCTTGGAGTGAATGTCAAAATGATTACAGGGGATCAGCTAGCCATAGGAAAGGAAACTGGCCGCCGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCATTGCTTGGGCAGGACAAGGATGAATCCATATCTGCATTACCTATTGATGAACTGATTGAAAAAGCAGATGGGTTTGCCGGTGTTTTTCCTGAGCACAAGTACGAGATTGTGAAACGTTTGCAAGCCAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGACGCACCTGCACTCAAGAAAGCCGACATTGGTATAGCTGTTGCTGATGCGACTGATGCAGCTCGGAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATTAGTGCAGTGTTGACCAGTCGAGCCATCTTCCAGAGAATGAAAAATTATACAATTTATGCTGTCTCTATTACAATTCGTATAGTACTTGGTTTCATGTTACTAGCTCTCATATGGAGGTTTGATTTTCCACCTTTTATGGTTCTCATTATCGCCATTCTAAATGATGGTACTATCATGACAATTTCAAAAGATCGAGTAAAACCATCACCTCTGCCTGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCATTGTGCTTGGAAGTTACTTGGCAATGATGACAGTCATATTCTTTTGGGCAGCATACAAAACTGATTTCTTCCCGCGAGTTTTTGGAGTCTCTACCCTCGAAAAAACTGCTCATGATGATATCCGAAAACTAGCCTCTGCAATCTATCTTCAAGTGAGCATCATTAGTCAGGCTCTTATATTTGTGACTCGGTCTCGGGGTTGGTCCTATGTTGAACGTCCTGGTATTTTGCTCGTGGCAGCTTTCGTGATTGCCCAGCTTATTGCTACATTGATTGCGGTATATGCGAACTGGAGCTTTGCTGCCATTGAAGGCATAGGTTGGGGTTGGGCTGGTGTAATATGGCTATATAACATAATATTCTACATCCCACTTGACCCCATCAAGTTTCTAATTCGATATGCTTTGAGTGGGAGGGCTTGGGAGCTTGTCATCGAGCAAAGGATTGCATTTACAAGACAAAAGGACTTTGGAAAGGAGCAAAGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAGCCACCTGACACCAAGATGTTCACCGAGCGCACACATTTCAATGAACTCAATCAAATGGCTGAAGAAGCTAAAAGGAGAGCCGAAATTGCTAGGCTGCGAGAATTGCATACACTAAAGGGTCATGTAGAATCAGTTTTGAAATTGAAGGGGATTGATGTAGACACAATTCAGCAAGCATACACAGTTTGA 2709 0.4308 MGDKSQVLEAVLKETVDLENIPVEEVFENLRCSKEGLSSEAAEESSIFDAFDIYAVKSLLCKGFAFYLRFPSSFHFFLSFVGKVLRDGRWNEQDASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMFIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDVDTVVLMAAQASRLENQDAIDTAIVGMLADPKEARLGIREVHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRTLAVAFQDVPDGKKESPGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWRFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVSTLEKTAHDDIRKLASAIYLQVSIISQALIFVTRSRGWSYVERPGILLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFLIRYALSGRAWELVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVLKLKGIDVDTIQQAYTV 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00786 902 SUPERFAMILY Calcium ATPase, transduction domain A 83 177 IPR008250 -
Vian4g00786 902 Gene3D - 851 902 - -
Vian4g00786 902 FunFam ATPase 4 plasma membrane-type 521 767 - -
Vian4g00786 902 SFLD Haloacid Dehalogenase 259 587 - -
Vian4g00786 902 Gene3D - 274 573 IPR023214 -
Vian4g00786 902 Pfam E1-E2 ATPase 83 256 - -
Vian4g00786 902 FunFam Plasma membrane ATPase 430 584 - -
Vian4g00786 902 NCBIfam plasma-membrane proton-efflux P-type ATPase 82 758 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian4g00786 902 SUPERFAMILY HAD-like 273 583 IPR036412 -
Vian4g00786 902 PRINTS P-type cation-transporting ATPase superfamily signature 559 571 - -
Vian4g00786 902 PRINTS P-type cation-transporting ATPase superfamily signature 536 555 - -
Vian4g00786 902 PRINTS P-type cation-transporting ATPase superfamily signature 431 442 - -
Vian4g00786 902 PRINTS P-type cation-transporting ATPase superfamily signature 277 291 - -
Vian4g00786 902 PRINTS P-type cation-transporting ATPase superfamily signature 453 463 - -
Vian4g00786 902 PRINTS P-type cation-transporting ATPase superfamily signature 127 141 - -
Vian4g00786 902 FunFam Plasma membrane ATPase 289 436 - -
Vian4g00786 902 CDD P-type_ATPase_H 83 793 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian4g00786 902 SFLD p-type atpase 259 587 IPR044492 -
Vian4g00786 902 Coils Coil 853 873 - -
Vian4g00786 902 NCBIfam HAD-IC family P-type ATPase 511 625 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 NCBIfam HAD-IC family P-type ATPase 86 297 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 ProSitePatterns E1-E2 ATPases phosphorylation site. 279 285 IPR018303 -
Vian4g00786 902 Gene3D - 165 767 - -
Vian4g00786 902 PANTHER CALCIUM-TRANSPORTING ATPASE 82 835 - -
Vian4g00786 902 FunFam Plasma membrane ATPase 81 164 - -
Vian4g00786 902 PRINTS H+-transporting ATPase (proton pump) signature 508 524 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 PRINTS H+-transporting ATPase (proton pump) signature 536 552 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 PRINTS H+-transporting ATPase (proton pump) signature 712 733 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 PRINTS H+-transporting ATPase (proton pump) signature 567 592 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 PRINTS H+-transporting ATPase (proton pump) signature 393 411 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00786 902 Gene3D - 289 436 IPR023299 GO:0000166
Vian4g00786 902 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 799 IPR023298 -
Vian4g00786 902 Gene3D - 83 164 - -
Vian4g00786 902 Pfam haloacid dehalogenase-like hydrolase 273 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00786 Vian-Chr4 10269824 10275330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00786 83 902 Primary Pumps ATPases AT5G62670 92.683 0.0 1586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00786 K01535 - gmx:100782459 1560.43