Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00785 ATGAGTCTCACTGTACATGGACCGGTATCACTTGTCATCCTGGGGAACAACGAGTACGCTCAATGTATAAATCTACCTTATATGCAACTTGGGGGTATTATATCTCCCAGCATTGGCAAACTCAGCAGACTGCAGAGACTGGCACTTCATCAGAATGGCTTACATGGAGTTATTCCTAATGAAATTGGCAATTGTACAGAGCTTAGAGCACTATATTTGAGAGCTAATTATTTACAAGGAGGCATCCCATCAAATATTGGAAATCTTTCTTATTTACATGTATTGGATTTGTCAAGTAACTCATTGAAGGGTGCTGTACCATCCTCTATAGGTCGTCTTACACAATTGCGTGTTCTGAACTTGTCAACTAATTTCTTTTCCGGTGAAATCCCTGACCTTGGAGTACTAAGCACCTTCGGGAACAATGCGTTTATTGGGAACTTAGATCTTTGTGGGCGGCAAGTTCAGAAACCATGTCGGACATCACTTGGTTTTCCAGTGGTGCTACCACATGCAGAAAGTGATGAAGCTGCAGTTCCTGCTAAAAGATCTTCACATTATGTGAAGTGGGTGTTAGTTGGTGCAATAACAATAATGGGGCTTGCACTTGTTATAACTCTTTCGTTACTATGGATTTGCTTGCTATCAAAGAAGGAAAGAGCTGCTAGAAAATACATAGAAGTTAAGGATCAAGTCAACCCAGAATCAAGTAGGAAGGATGATGGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATTTGAGATCATAGAAAAGTTGGAGTCTCTCGACGAAGATGATGTGGTAGGATCTGGAGGATTTGGTACCGTATATAGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGATAGAAGCCGTGAAGGTTCTGATCAGGGTTTTGAGAGGGAACTAGAGATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTGCGTGGTTACTGCAGACTTCCTTCTACTAAGCTTCTAATCTACGACTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAACACTGAACAATCACTGAAATGGAGTACACGCCTAAAGATTGCTCTTGGTTCAGCCCGGGGTTTGGCTTACTTGCACCACGACTGCTGCCCGAAAATTGTGCACCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACAGTGGTTGCAGGCACCTTTGGTTATCTGGCACCAGAGTATCTACAAAGTGGAAGAGCGACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGACCAACAGATCCTTCATTTGCAAGGAGAGGAGTAAATGTTGTTGGTTGGATGAACACGTTCCGGAAAGAAAATAGATTGGAGGACGAAGTAGACAAAAGATGTAGTGATTCAGTAGATGCAGAATCTGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCGGATGAACGTCCATCAATGAACCAAGTGTTACAGATACTGGAACAAGAGGTCATGTCTCCCTGCCCAAGTGATTTTTATGAATCACACTCAGATCACTGA 1665 0.4222 MSLTVHGPVSLVILGNNEYAQCINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGVIPNEIGNCTELRALYLRANYLQGGIPSNIGNLSYLHVLDLSSNSLKGAVPSSIGRLTQLRVLNLSTNFFSGEIPDLGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSSHYVKWVLVGAITIMGLALVITLSLLWICLLSKKERAARKYIEVKDQVNPESSRKDDGTKLITFHGDLPYTSFEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLKWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFRKENRLEDEVDKRCSDSVDAESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00785 554 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 35 159 - -
Vian4g00785 554 ProSitePatterns Protein kinases ATP-binding region signature. 272 294 IPR017441 GO:0005524
Vian4g00785 554 SUPERFAMILY Protein kinase-like (PK-like) 244 536 IPR011009 -
Vian4g00785 554 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 342 546 - -
Vian4g00785 554 SMART serkin_6 266 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00785 554 Gene3D Ribonuclease Inhibitor 9 161 IPR032675 -
Vian4g00785 554 SUPERFAMILY L domain-like 14 145 - -
Vian4g00785 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Vian4g00785 554 Pfam Leucine rich repeat 67 124 IPR001611 GO:0005515
Vian4g00785 554 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 19 536 - -
Vian4g00785 554 ProSiteProfiles Protein kinase domain profile. 266 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00785 554 Gene3D Phosphorylase Kinase; domain 1 229 341 - -
Vian4g00785 554 Pfam Protein kinase domain 269 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00785 554 Gene3D Transferase(Phosphotransferase) domain 1 342 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00785 Vian-Chr4 10256497 10259807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00785 23 544 Receptor kinase-like Gene Family AT2G35620 51.916 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vian4g00785 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00785 - - gmx:100805042 1020.76