Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00783 ATGGTGGGTGGAACTGTCTTTTCCGCTGCTTCAAGTTTAACCACTTTGCTTCCCAACCAAACACCTCCTTCCGCCTCTCAGCCTCTCGATTCCATTTTCCACTCTTCTTCTTCTGCTTCTTCTTCCCCTTTTCTCGGTTCAAGATCTATAGTGAGCTTTGGAGGTGTTCAAGGCGGGAAAGGGTGCAACGAGTCGTTCTTCCTGCCTTACGATGATAATGGGGATGAGGACACGGACGAGTACTTTCATCAGCCTGAGAAAAAACGCAGGCTGTCCGTTGACCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAAGAACTCGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACGAAGCAGATGGAGAAGGATTATGATTCCCTGCACGCATGCTATAATGATCTCAAGGCCAGCTATGATGATCTTCTCAGGGAAAAGGATAAGCTCCAAGCTGAGAATGGCAAGCTTTTGGTAGCAAAGCTCAGTGAGAAGGTGCTCGAAAGAGAAAAACTGGAGGAGGGGAACTTTTACAGGGCTGAAACCAAGGGATTTCAGGAGCCGCTGCAGAAGTCTATGATTGATTCAGCTTCAGAGGGTGAAGGGTCCAAAGTTGACATTAGTTCAGCAAAGAGTGACATGTTTGATTCATCAGAAAGCCCACGTTACACTGATGGAGTACACTCTACTCTCCTTGAGACCGGTGACTCTTCTTATGTGTTTGAAGCTGATCAGTCTGATGTGTCACAGGATGAAGGAGATAACCCGAGCAATACCCTTTTGCCTCATTACATGTTTCCCAAACTTGAAGATGTTGGTTACACGGACCAGCCTCATAATTCATGTCATTTTGGATTTCCCGAGGAAGAAGATCAAGCCATCTGGTCTTGGTCTTACTGA 966 0.4772 MVGGTVFSAASSLTTLLPNQTPPSASQPLDSIFHSSSSASSSPFLGSRSIVSFGGVQGGKGCNESFFLPYDDNGDEDTDEYFHQPEKKRRLSVDQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLHACYNDLKASYDDLLREKDKLQAENGKLLVAKLSEKVLEREKLEEGNFYRAETKGFQEPLQKSMIDSASEGEGSKVDISSAKSDMFDSSESPRYTDGVHSTLLETGDSSYVFEADQSDVSQDEGDNPSNTLLPHYMFPKLEDVGYTDQPHNSCHFGFPEEEDQAIWSWSY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00783 321 Gene3D - 90 136 - -
Vian4g00783 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 239 IPR045224 GO:0003700
Vian4g00783 321 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Vian4g00783 321 MobiDBLite consensus disorder prediction 218 247 - -
Vian4g00783 321 CDD homeodomain 87 143 IPR001356 GO:0003677
Vian4g00783 321 SMART HOX_1 85 146 IPR001356 GO:0003677
Vian4g00783 321 Coils Coil 155 182 - -
Vian4g00783 321 Gene3D - 137 183 - -
Vian4g00783 321 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Vian4g00783 321 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Vian4g00783 321 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Vian4g00783 321 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Vian4g00783 321 SUPERFAMILY Homeodomain-like 73 144 IPR009057 -
Vian4g00783 321 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Vian4g00783 321 Pfam Homeobox associated leucine zipper 142 178 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00783 Vian-Chr4 10234688 10236360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00783 35 188 Homeobox Transcription Factor Family AT3G01470 48.428 1.07e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian4g00783 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00783 - - gmx:732618 480.33