Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00778 ATGGAGTTTCCTTCTCAAACATCCGGTCACCAGGTCAAGGAAGAGAACAGAACTGAATCAAGTCCTCGAGATGAACAACACCGTCGTCAACAAGAGATTGTTATGCAGGAGCCACCACTGGCTACTCCTGAAAGATCCACCGTCGAGGTTGGGCCAAATGTTTCTTGCCTATCCAAAATGGAAGAGGCTGATGAACTTGAAAATGCGAAAGCCGAAATGGGTGAAGTGATAGAAGAAAATCAAAGATTAAAGATGCGTTTGAACAGAATACTAAATGATTACCGAACACTGCAAATGCAATTCCACAGTATAGTTGAACAAGAGACAAAAGATTGTTCTGAGAAACCGAACAACGATGGCGAAGATGAAGGAGCGATGGAGGAATCAGAACTAGTTTCCCTGAGTCTTGGAAGAATTCCAATTATAAGAAGCAACGAGAAAGGGAAAGTCCCTAAAACATTGAAAGAAGAAGATAAAGAAGGGTTGTCCCTTGGATTGGAGTGCAAGTTCGAAACATCAAAATCTGGAAGTGCAAGTGAACATGTGGGGAATCCAAGCCCTAGCAATAGTGTTGAAGAAGTGGTAAAAGAAGAAGGTGGTGGAGAAAGCAAGGGACAGAAGACAAATAGAGATGAGATTGCTGAGCAAAACCCTGCGAAGAAAGCAAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAACGATGGATGTCAATGGAGGAAATATGGCCAGAAGATTTCAAAGGGAAATCCTTGTCCTCGAGCTTATTATCGTTGCACAGTTGCACCATCATGCCCAGTGAGAAAGCAGGTACAAAGATGTGCTCAAGACATGTCGATATTAATCACCACCTACGAAGGAATCCACAACCACCCTCTTCCTCTTTCAGCAACAGCCATGGCTTCCACCACTTCCGCAGCTGCTTCCATGCTATTGTCTGGATCATCAACCTCACTCTCTGGATCAAGAATTTCCCCAAACATCACCACCACTGCCGCAGATCTTCATGGAATAAACTTTTCCCTCCCAGATTCTTCCCAACCAAATCAATACTACCTTTCCCATCCTTCACTCTCATCTTCACCTTCACACCCCACCATCACTCTCGACCTCACTTCCAATCCATCCTCCTCTTCTCCTCCTTTTGTCAAATTCACTTCAAATTCAAACTACAACAACCCTCACAGGTACCCTCCTTCCACAAGCCTCAGCTTCACTTCCTCCCAATCTAACACAACTTCTTGGACCAACGGCTTTTTCAGCTATAACACTCAACCATATAATAACAACAGGAATACCAATGCCAATGTCAATGTCCTTGGCAACATAAACCTTGGTAAACAACAACCCATGGAGAACATCTACAGTTCCTTCATGCAAAGGAACAACAATCCAATCTCTCCTCTGCCGGACACCATAGCTGCAGCAACGAAAGTAATCACAGCAGACCCTAATTTTCAGTCAGCTTTGGCAGCGGCACTTTCTTCAGTTATTGGTTCAGGAAGCATTCAGGGAAACCAAGGTACATTAGAAAATCTGATTCAGAAAATAAAATGGGGTGAAATGCTTCCAACATCTTTTGCCTCACCTTCATCTCCAAAAGTCAATGGGTGTGCTTCAAGCTTCTTGAACAAATCACCGGCTAATTCACAACCAGGAAGTTTGATGTTTCTTCAACCACCTTTGCCACTTTCTAGCCCCAAAAGCGCTTCTGGGTCCCCCGGAGATCACAGAGACAAGAAAAATTAG 1755 0.4393 MEFPSQTSGHQVKEENRTESSPRDEQHRRQQEIVMQEPPLATPERSTVEVGPNVSCLSKMEEADELENAKAEMGEVIEENQRLKMRLNRILNDYRTLQMQFHSIVEQETKDCSEKPNNDGEDEGAMEESELVSLSLGRIPIIRSNEKGKVPKTLKEEDKEGLSLGLECKFETSKSGSASEHVGNPSPSNSVEEVVKEEGGGESKGQKTNRDEIAEQNPAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILITTYEGIHNHPLPLSATAMASTTSAAASMLLSGSSTSLSGSRISPNITTTAADLHGINFSLPDSSQPNQYYLSHPSLSSSPSHPTITLDLTSNPSSSSPPFVKFTSNSNYNNPHRYPPSTSLSFTSSQSNTTSWTNGFFSYNTQPYNNNRNTNANVNVLGNINLGKQQPMENIYSSFMQRNNNPISPLPDTIAAATKVITADPNFQSALAAALSSVIGSGSIQGNQGTLENLIQKIKWGEMLPTSFASPSSPKVNGCASSFLNKSPANSQPGSLMFLQPPLPLSSPKSASGSPGDHRDKKN 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00778 584 Coils Coil 59 100 - -
Vian4g00778 584 Pfam WRKY DNA -binding domain 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00778 584 MobiDBLite consensus disorder prediction 195 217 - -
Vian4g00778 584 MobiDBLite consensus disorder prediction 544 558 - -
Vian4g00778 584 MobiDBLite consensus disorder prediction 107 122 - -
Vian4g00778 584 MobiDBLite consensus disorder prediction 12 32 - -
Vian4g00778 584 MobiDBLite consensus disorder prediction 107 131 - -
Vian4g00778 584 MobiDBLite consensus disorder prediction 174 191 - -
Vian4g00778 584 MobiDBLite consensus disorder prediction 365 389 - -
Vian4g00778 584 ProSiteProfiles WRKY domain profile. 230 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00778 584 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 58 509 IPR044810 GO:0003700
Vian4g00778 584 MobiDBLite consensus disorder prediction 1 53 - -
Vian4g00778 584 SUPERFAMILY WRKY DNA-binding domain 228 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g00778 584 MobiDBLite consensus disorder prediction 174 217 - -
Vian4g00778 584 SMART WRKY_cls 235 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00778 584 FunFam probable WRKY transcription factor 31 220 297 - -
Vian4g00778 584 Gene3D WRKY domain 220 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g00778 584 MobiDBLite consensus disorder prediction 544 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00778 Vian-Chr4 10136596 10141570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00778 73 518 WRKY Transcription Factor Family AT5G15130 40.657 6.50e-81 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g00778 WRKY 2.7e-23 CL0274