Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00773 ATGTCGGACGAAGAACACCACTTTGAATCCAAGGGTGATGCTGGAGCCTCCAAGACCTATCCCCAGCAAGCCGGCACCATTCGCAAAAACGGCTACATCGTCATCAAGGGTCGTCCATGCAAGGTTGTTGAAGTTTCTACTTCCAAGACGGGTAAGCACGGTCATGCTAAGTGTCACTTTGTTGGGATTGATATTTTCACTGCCAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCATGTGAATCGTACTGATTACCAGTTGATTGATATTTCTGAGGATGGATTTGTTAGCTTGCTTACTGAAAATGGGAACACCAAGGATGACCTCAGGCTTCCTACCGATGATAGTCTGCTTACTCAGATAAAAGTCAACATTTTGAGTATTCACACTCAAAACTCGTTTATTGAAAATTACGCATCATTTACTCTCACATTCTCAAATCAAACCAATGCCAATTTTTTCTTCTTAATCGACACAGCTTTCCTCCGCTTTATTGGACCACAGACAGATATTAATTAA 537 0.4227 MSDEEHHFESKGDAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDSLLTQIKVNILSIHTQNSFIENYASFTLTFSNQTNANFFFLIDTAFLRFIGPQTDIN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00773 178 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Vian4g00773 178 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 130 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian4g00773 178 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian4g00773 178 Gene3D - 86 136 IPR012340 -
Vian4g00773 178 MobiDBLite consensus disorder prediction 1 22 - -
Vian4g00773 178 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 128 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian4g00773 178 FunFam Eukaryotic translation initiation factor 5A 86 133 - -
Vian4g00773 178 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Vian4g00773 178 SMART eIF_5a_2 85 141 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian4g00773 178 Gene3D - 1 85 IPR014722 -
Vian4g00773 178 SUPERFAMILY Nucleic acid-binding proteins 86 129 IPR012340 -
Vian4g00773 178 NCBIfam translation initiation factor IF-5A 17 136 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00773 Vian-Chr4 10042434 10052714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00773 1 128 Eukaryotic Initiation Factors Gene Family AT1G13950 90.625 4.85e-84 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00773 K03263 K02180 fve:101296375 260.381