Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00772 ATGGGGTGTGTGAGCTCGAAGCAGGCGGTGTCCGTGACGCCGGCGATTGACCACTCGGGCGCGTTTCGGAGCAATGCTGCGGTTCTTGGCGAGTCGGAGCGCAAGGAGAAGAAGAGGAGCAAGAAGAGGACCGAGTCGGGGGGAGCGAGTCAGAGCGAGGTCGGTGAGTCGGGGAGAACGAGTTCCAATTGTGAATCGTTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCAGCGTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTCCCCCTCTGCGCCGATGCCTTCGAAAAACTTGAGAAGATAGGGCAGGGAACGTATAGCAGTGTGTTTCGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATATTGATTCTGCGACGCCTTGATCATCCCAATATAATAAAGCTTGAGGGCTTGATTACTTCGAGGCTGTCCTGTAGCATTTACCTCGTCTTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTTCCCCTGATATCAAATTCACTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGGGGAGTCATGCATAGGGATATTAAGGGGTCGAATCTTTTGGTAAATAATGAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCGAATTATGTCAGTTCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTTACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTTGGTTCGACGGACTATGGTCCGGCCGTGGATCTCTGGAGTGTTGGTTGTGTGTTTGCGGAGCTACTTGTCGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTTAAGCTCTGTGGCTCACCACCTGATGAATACTGGAAAAAGACTAAACTTCCTCATGCAACGTTATTTAAGCCACAACAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATTTGCCAGCGGCCAGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGAGTGCTACATCTGCTCTTTCATCGGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCGACCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAGTCAAGGAAAAAGATTAGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCCAGAAAGCCACACGGAGTCAGTAAACTAGCCCCAGCAGAGGATTTCGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTTTCCGCAACCATGAAGAAGAGAAGATTAAAATAGGTGGCAAAACACAGAAGTCATCTAGTGGTAAAGCTGAAGATGCTTCCCATACGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCCGGGCCGTTACAGGTTTCAACATCAAGTGGATTTGCATGGGCAAAAAGCAGAAAAGATGACGCTTCATTTCGATCCCATTGTCGAAATATTTCAAGAGGACATATTTTCAATCCATCAGAACCTTCTACATTAAATTTAAGGAATAATTTGGACACCACAAACCAGGAAAATAAAGAGTTTTGTGGGGGAGGCGTCAATTCTAGGGGCCATCAGCTGCTTGAAATTTCTAAGCTTTCAATGCAGAACCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCATTCACAAGAACTGTCTATGGCCATATATCACCGAGAAGATTCAGCATCCAAGAGAAATAACCTGAGTTTTCAAGATCAAGGAGAAAGGGTTGAATTTTCTGGGCCCCTACTATCTCAAATGCACACTGTTGATGAGCTCTTGGAAAGGCATGAGCGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGGCGAAAAAATAA 2043 0.4797 MGCVSSKQAVSVTPAIDHSGAFRSNAAVLGESERKEKKRSKKRTESGGASQSEVGESGRTSSNCESLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLCADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVSSGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRQSFKDLPAASVHLLQTLLSVEPYKRGSATSALSSEYFKTKPYACDPSTLPIYPPSKEIDAKHREESRKKISGRVRGTETRKPSRKPHGVSKLAPAEDFASQTQTSQKVNGRSFRNHEEEKIKIGGKTQKSSSGKAEDASHTKNASQGDIPLSGPLQVSTSSGFAWAKSRKDDASFRSHCRNISRGHIFNPSEPSTLNLRNNLDTTNQENKEFCGGGVNSRGHQLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMAIYHREDSASKRNNLSFQDQGERVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKAKK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00772 680 MobiDBLite consensus disorder prediction 453 467 - -
Vian4g00772 680 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00772 680 Gene3D Transferase(Phosphotransferase) domain 1 193 432 - -
Vian4g00772 680 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00772 680 MobiDBLite consensus disorder prediction 413 442 - -
Vian4g00772 680 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00772 680 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Vian4g00772 680 FunFam probable serine/threonine-protein kinase At1g54610 193 433 - -
Vian4g00772 680 MobiDBLite consensus disorder prediction 405 515 - -
Vian4g00772 680 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Vian4g00772 680 CDD STKc_CDK9_like 110 394 - -
Vian4g00772 680 SUPERFAMILY Protein kinase-like (PK-like) 103 401 IPR011009 -
Vian4g00772 680 PANTHER CELL DIVISION PROTEIN KINASE 108 398 - -
Vian4g00772 680 MobiDBLite consensus disorder prediction 47 62 - -
Vian4g00772 680 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vian4g00772 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vian4g00772 680 MobiDBLite consensus disorder prediction 24 62 - -
Vian4g00772 680 MobiDBLite consensus disorder prediction 468 482 - -
Vian4g00772 680 MobiDBLite consensus disorder prediction 29 46 - -
Vian4g00772 680 MobiDBLite consensus disorder prediction 483 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00772 Vian-Chr4 10015599 10021998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00772 102 426 Core Cell Cycle Gene Families AT5G10270 51.613 8.64e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian4g00772 Pkinase 2.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00772 - - var:108332003 1329.31