Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00771 ATGCATGGCCCAGTTCCAACCCAACCAAGTCGAAATGACAATGTGGACTCTGTTTCTGTTTCTGGGTTTTCTGTGTCATTGGGTTTGGTCTATTCCTGTTGGTCATGTTTTTCAGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATGTTGGGGGGGTCGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTACGAGATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCCCTTTTGCCTCTGGAGATGATTCACCACTTCCTTCGGTCAAGTGAGAGCTGGTTGTCCTTGGAGAGCCAACAAAACGTGCTTTTAATGCACTGTGAAAGGGGTGGTTGGCCTGTACTTGCGTTTATGCTAGCTGGTCTTCTGTTGTACAGGAAACAGTACAACGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCCAAAGAACTTCTCCACCTTCTATCCCCTTTAAATCCACAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTCGATGGCCTCCGTCAGAAACACCCTTATATTTAGATTGCATTATTCTCAGGGTCCTTCCTCTGTTTGACGGAGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCCACTTCAATGGGCCAAAATCATGTTCGCCACTACTTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCGTGAAGAGGTGATGTTCAGAGTCATGTTTCACACTGCGTTTGTACGGTCAAATATATTGACGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCAGTTCCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTCGATGCGAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCTGAAGAGATCTTCAGCAGTGTAATTGATGTACTGGAAGGTAAGGGAGATTACGATTTTCCAATGGTTCATGACAGTGGAGTGGATGATGGAAGTCATAAAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCGTGTTAGATGATGGGATTAACCAACAGGTTGATGATGCGAGGTACAAGCTTGACAAGGGGGTGGTTTTAGATACTCATGCTGTCAAAGATATTGGAGTGGATTATGGGGTAACTTTTATGACAAAGGAAGTCACTCTGAATGCTCTTGATAAATTAGCAGTTAAGCAAAACAAATATGGCGAAGATAACAACAAAACGGAACAAGACTTAGAATCAGAACTAGGGCTGCAGGTGCTTGATATTTCCAGACCAAAATCTGATAAATTACTTATTTCTTCTGAAAAGACACAACTTCCTTCAAACTCAAAGCCCATGCAAGAACCGCATGGTTTTCAGGCAAATTATGCAAAACCCAATGTAACAACTAGATCGGTTCCTTCTAGTAAGGGTTCTCTTCAAGATTCCATTAATTTCTCACATCCACCATCAAGGAACAATAGTTCACCACTAACATTGTCATATGTTACCTCTGAAAACAAGGAAATCATTGATGCAAAAGGAAACTCTACTTCTAGTTCTCATGTCTCTGAAGTAATTGCTTTTATGGACACGATAAACGACCTGAAAAGCTGTGATGGTGATAACTCAATTTCTTCAGACGCTGTACCTGAAATAGGCTCAAACTGTCCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGCTATGATCAAATGTTACAACTTCATCCACCTCCACCTCCTCCTCCACCTCCAATTTTTGGACAAAATACCCATTGGAAATCTGTTGGACCTCCTTCTCCTCCCATTGCAAATGGTGTAATTCCATCAAAAGTTTCACTAGCACCACCACCACCACCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCTTCGCTTCCTTCTACCTCAATCTCTCCAACAACGTTTAAAGCTCCACCTCCTGCACCCCGACCACCACATTATCCTTCACCTCCTTTAAGTAAATCTACACGACTTCCTCCGCCTCCTTTAGGTACTGCTCCACCAGCACCACCACCTCCTCCTCCTTTAAGTGCTGCTCCACCACCGCCACCTCCTCCTCCTTCTTTATCCAGAGGTTCACCTCCCCCACCACCGCTCCCTCCATCAAGTAGAGCACCACCTCCACCGTCATCTTCTTCACTGTCCAGAGCTCCACCTCCTCCACCTCCACCAAATCGTGGACCACCACCAACAACAATGCCTGGAGGCACAGCTCCTCCACCACCTTCAGGTGGTCGAGGCCAACCTCATACTGGAACGCGAGCTACTCTTGCTCATTCTCCCCATGTACCTCTTGGTGGTGCTCCTTTTCCTTCACCAATTGGAACTGATACAAGAGGGAAAGGTCGGGGACTTGGACGTCCTACTGGGGCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAATCTGGCGGGCGGCGCAAATCTGTTGGATCTAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTAGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAACTTAGAGTATTCTCTTTCAAAATTCAGTTTGGGACTCAGATTACAGAATTTAAGAAGAGTTTACACACAGTCAACTCTGCTTGTGAAGAGGTCCGAAACTCATTCAAACTAAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTATTGGATTCAAGTTAGACAGTCTCTTAAAACTAACTGACACTCGTGCTTCAAATAGTAAAATGACACTCATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTATTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGGGGATTAGAAAAGGTCAAACAGGAGCTGGCTGCATCTGAAAACGATGGCCCAGTGACTGAAGTTTTTCGTAAGAAGGACCGTTATGACTTGTGTGTTTCTGCTTGTCCTTGTATCACACCTTCGAAGAATGTGTTTGACTTTACACTAGAAAATCCCACTGTTACCCTCTGTGCACATGGTAAAGGACAATCTTTTCTCTGTAGCTACATCTACTCTTCTGACAGCACGAAAATGAACATACAGACTCAGAAATTAGATCAGTTAGCTTTGTTTCAGATCAGGTCAGAGGTGGCATCTGTAACAAACCTATATTCTGTGGTGGGAAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGACCCTACCCGCTGTCCTTTCGAGCAAGTTACTGCAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAGGCACATGAAGAGAATTTCAAACAAACAGTGTTAGAGAAAAAGAAAGCTGATAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTCATAAGGAAGAGTGGAAAAGATGAAGAAGAAATGGGTAGTAAGGGGACTGCTTCCGATTTTGAGTTAAGTAGCCCACTTGGTGTGACAATTAGCCTTTCAAGGTTTGGCCGATTAGGCGAATTGACGGATCCTGATTTTGGAATAGAAAATTCCCCAGCATTTGCATTTCCTCTGTTTCTCAACATTGATGCCATGACCAACTGGTGA 4269 0.435 MHGPVPTQPSRNDNVDSVSVSGFSVSLGLVYSCWSCFSVFDCCFSKNVLEEEEYKVYVGGVVAQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLESQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRHLGSRWPPSETPLYLDCIILRVLPLFDGGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYLQAECMLVKIDIRCHVQGDVVLECIHLSDDFVREEVMFRVMFHTAFVRSNILTLSRDEIDIQWDAKDQFPKDFKFEVLFLDADAVMPNLNTVDASDTECASPEAEEFYEAEEIFSSVIDVLEGKGDYDFPMVHDSGVDDGSHKEIWKEYSDPHTFLDSVLDDGINQQVDDARYKLDKGVVLDTHAVKDIGVDYGVTFMTKEVTLNALDKLAVKQNKYGEDNNKTEQDLESELGLQVLDISRPKSDKLLISSEKTQLPSNSKPMQEPHGFQANYAKPNVTTRSVPSSKGSLQDSINFSHPPSRNNSSPLTLSYVTSENKEIIDAKGNSTSSSHVSEVIAFMDTINDLKSCDGDNSISSDAVPEIGSNCPVKETSLQLANQAPQQSYDQMLQLHPPPPPPPPPIFGQNTHWKSVGPPSPPIANGVIPSKVSLAPPPPPPPPPPLQSTNEPSLPSTSISPTTFKAPPPAPRPPHYPSPPLSKSTRLPPPPLGTAPPAPPPPPPLSAAPPPPPPPPSLSRGSPPPPPLPPSSRAPPPPSSSSLSRAPPPPPPPNRGPPPTTMPGGTAPPPPSGGRGQPHTGTRATLAHSPHVPLGGAPFPSPIGTDTRGKGRGLGRPTGAGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYFLELMKVPRVESKLRVFSFKIQFGTQITEFKKSLHTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLISLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASENDGPVTEVFRKKDRYDLCVSACPCITPSKNVFDFTLENPTVTLCAHGKGQSFLCSYIYSSDSTKMNIQTQKLDQLALFQIRSEVASVTNLYSVVGRNADALALYFGEDPTRCPFEQVTATLLNFTRLFLKAHEENFKQTVLEKKKADKEAEMEKAKGINFIRKSGKDEEEMGSKGTASDFELSSPLGVTISLSRFGRLGELTDPDFGIENSPAFAFPLFLNIDAMTNW 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00771 1422 Gene3D - 221 350 - -
Vian4g00771 1422 Gene3D Formin, FH2 domain 889 1333 IPR042201 -
Vian4g00771 1422 MobiDBLite consensus disorder prediction 549 578 - -
Vian4g00771 1422 ProSiteProfiles C2 tensin-type domain profile. 214 353 IPR014020 -
Vian4g00771 1422 SMART PTEN_C2_2 212 352 IPR014020 -
Vian4g00771 1422 Pfam Formin Homology 2 Domain 892 1205 IPR015425 -
Vian4g00771 1422 SMART it6_source 663 1337 IPR015425 -
Vian4g00771 1422 SUPERFAMILY Formin homology 2 domain (FH2 domain) 964 1350 - -
Vian4g00771 1422 MobiDBLite consensus disorder prediction 941 960 - -
Vian4g00771 1422 Coils Coil 1169 1196 - -
Vian4g00771 1422 PRINTS Proline rich extensin signature 701 722 - -
Vian4g00771 1422 PRINTS Proline rich extensin signature 762 787 - -
Vian4g00771 1422 PRINTS Proline rich extensin signature 743 760 - -
Vian4g00771 1422 PRINTS Proline rich extensin signature 722 738 - -
Vian4g00771 1422 PRINTS Proline rich extensin signature 664 680 - -
Vian4g00771 1422 MobiDBLite consensus disorder prediction 651 894 - -
Vian4g00771 1422 ProSiteProfiles Formin homology-2 (FH2) domain profile. 887 1348 IPR015425 -
Vian4g00771 1422 Pfam C2 domain of PTEN tumour-suppressor protein 213 350 IPR014020 -
Vian4g00771 1422 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 214 350 IPR035892 -
Vian4g00771 1422 MobiDBLite consensus disorder prediction 729 842 - -
Vian4g00771 1422 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 202 IPR029021 -
Vian4g00771 1422 Gene3D Protein tyrosine phosphatase superfamily 34 220 IPR029021 -
Vian4g00771 1422 MobiDBLite consensus disorder prediction 699 717 - -
Vian4g00771 1422 PANTHER FORMIN-J 801 1349 - -
Vian4g00771 1422 Coils Coil 1323 1343 - -
Vian4g00771 1422 MobiDBLite consensus disorder prediction 661 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00771 Vian-Chr4 9973524 9986876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00771 39 596 FH2 protein (formin) Gene Family AT5G07740 56.926 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00771 - - vum:124820270 1360.51