Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00761 ATGGAGTCTGGTGAGGAGATTAATTTGAATATAGAAAGTGGTGGTGGAAATAATGGGAAGAGTGGTGATGGGTTCATTGATAGAAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAGGAGTTCTCAAGAGGTCTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTGACTTTAGTAAAGTCGCCGAGACAGGTAATTGACGCGCTGAATGCAGAGGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCAACAAAGAAGGGCATGAAGATGTTGAAGTACATAGCACGGGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCTGCTGACTATCTAGTAAAGCCCTTACGTACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGAGTTTGATCTTGTAGCATCAGATCCCAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCAACAATCCAGAGGTGGGATTGTCAGTCCAACAAGAGCAAGAGTCTACTATTGCTGCTGTTGAGAAACCTCTAGATGCTCATGCATCAGAACACGGGCCTGAAGTTGATGGATTTCATGATCATCGAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTTTTCACGTATGTCAAAGCATCTATACTGAAGAGCAATTTTGAAGGGGTTGTTAACGTAGACAACCATGGTGCTGCACATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAATGACCTTCAAACACGTGAAAATGGAGAGACTTGTGAAAGTCAATCGCAAGATGACTTACCAAGCAGCAGTAGTATACCTGATTCTCTCTCTATGGAAAGGTCTTGTACTCCGCCTGCATCAGTGGAAGTTTCCCCGCAAAAGCACAAGGAAGCAAATTTCCATCAGGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCATGAAGTATCTGGCATGTCTTCCCAACATACTTATCCATATTATATTTCAGGAGTTGTTAATCATGTCATGATGCCTTCGTCTGCACAAATGTATCACCAGAAGAATATGCAGGACCTACAGAATCATCCTAGTGCAGCTATGATTGCTCAATACAGTCATCTTCCCCAAGGTGGTCCTCACGGACCAGGGATGACATCTTTCCCATACTACCCAATGAGTATATGCTTACAACCTGGTCAGGTTTCTCAACCCCATTCATGGCCATCATTTGGCAGCTCAAGTTCATCAGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGACAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGACGGCCTCGAGTGAGGGGACAGTTTGTCAGAAAATTAAACAGTGCCAATGTTGATCTCAATGGACAGCCTGCATCAATTGACTATGATGAAGATGATGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA 1674 0.4343 MESGEEINLNIESGGGNNGKSGDGFIDRSKVRILLCDNDSRSSQEVFTLLLRCSYQVTLVKSPRQVIDALNAEGQHIDIILAELDLPTKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSKRSNNPEVGLSVQQEQESTIAAVEKPLDAHASEHGPEVDGFHDHRTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNHGAAHVRMEVMHQACAQQGVNDLQTRENGETCESQSQDDLPSSSSIPDSLSMERSCTPPASVEVSPQKHKEANFHQGVMHPRNGTHCSEHEVSGMSSQHTYPYYISGVVNHVMMPSSAQMYHQKNMQDLQNHPSAAMIAQYSHLPQGGPHGPGMTSFPYYPMSICLQPGQVSQPHSWPSFGSSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPASIDYDEDDEEDEDDQGARDSSPEDA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00761 557 MobiDBLite consensus disorder prediction 522 557 - -
Vian4g00761 557 MobiDBLite consensus disorder prediction 307 343 - -
Vian4g00761 557 MobiDBLite consensus disorder prediction 533 557 - -
Vian4g00761 557 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vian4g00761 557 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vian4g00761 557 MobiDBLite consensus disorder prediction 225 246 - -
Vian4g00761 557 MobiDBLite consensus disorder prediction 454 469 - -
Vian4g00761 557 ProSiteProfiles CCT domain profile. 477 519 IPR010402 GO:0005515
Vian4g00761 557 SUPERFAMILY CheY-like 27 157 IPR011006 -
Vian4g00761 557 Pfam CCT motif 477 519 IPR010402 GO:0005515
Vian4g00761 557 Gene3D - 31 234 - -
Vian4g00761 557 MobiDBLite consensus disorder prediction 225 249 - -
Vian4g00761 557 SMART REC_2 31 146 IPR001789 GO:0000160
Vian4g00761 557 MobiDBLite consensus disorder prediction 307 349 - -
Vian4g00761 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 318 IPR045279 GO:0009736
Vian4g00761 557 MobiDBLite consensus disorder prediction 454 473 - -
Vian4g00761 557 MobiDBLite consensus disorder prediction 179 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00761 Vian-Chr4 9796266 9800341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00761 20 556 Response Regulator Gene Family AT5G61380 50.318 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vian4g00761 Response_reg 3e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00761 K12127 - gmx:100799728 946.036