Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00750 ATGGTGTTTTTGGGGCTTCTCTTGCTGGGATTCCTTTCTCTGGCTACACCTCTCTCTTCTGCTTTTGATTATGGTTGGATGAATGCTCATGCAACCTTTTATGGAGGAGGTGATGCCTCTGGCACTATGGGTGGAGCATGTGGGTATGGGAACCTGTATAGCCAGGGTTATGGAACAAACAGTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGTTTAATTTGCGGGGCATGTTTCGAGATTAGAGCTGGAATAGTACCTGTTGCTTACAGAAGGGTCCCTTGCCAAAAGAGAGGGGGCATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAGTCCTAATCACAAACGTGGGAGGTGCTGGTGATGTTCATGGAGTTTCCATCAAAGGTTCAAGAACAAATTGGCAACCTATGACCAGAAACTGGGGACAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCTTTTAAGGTTACCACCAGCGAGGGATGCACCGTGGTCTCTTACAATGTTGCACCGCCAAGTTGGTCCTTTGGCCAAACTTTCAACGGCGGCAACCAATTCGTTTAA 585 0.4735 MVFLGLLLLGFLSLATPLSSAFDYGWMNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNSAALSTALFNNGLICGACFEIRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVHGVSIKGSRTNWQPMTRNWGQNWQSNTYLNGQSLSFKVTTSEGCTVVSYNVAPPSWSFGQTFNGGNQFV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00750 194 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 110 189 IPR007117 -
Vian4g00750 194 SUPERFAMILY PHL pollen allergen 97 188 IPR036749 -
Vian4g00750 194 Gene3D - 14 84 IPR036908 -
Vian4g00750 194 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 113 IPR007112 -
Vian4g00750 194 PANTHER EXPANSIN-A15 81 193 IPR002963 GO:0009664
Vian4g00750 194 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vian4g00750 194 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vian4g00750 194 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vian4g00750 194 Gene3D - 100 194 IPR036749 -
Vian4g00750 194 Pfam Expansin C-terminal domain 101 178 IPR007117 -
Vian4g00750 194 SUPERFAMILY Barwin-like endoglucanases 25 118 IPR036908 -
Vian4g00750 194 FunFam Expansin 100 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00750 Vian-Chr4 9596893 9598834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00750 26 191 Expansin Gene Family AT3G29030 61.860 1.07e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00750 - K20628 oeu:111367160 295.819