Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00738 ATGAAGAAGAGACAGGTGGTCCTGAAAAGAGATGTGGCCAACACTTCGTCTTCAGTGACCAGAAATGTAAGATATGGAGAGTGCCAGAAGAATCATGCAGCGAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGTACAGGGGATGGAGGTGGTGGGGCTCTTACATGCGCTGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGCAAACTGAGGTTCATGGAACAATTAAGGATGACCTAGTTGATCAACTACAAGATGATGAGATTAATAGTGAAGAGGTGCAAATTCCCTTTCAATCTCGCAGTCCAGCGCACATCATTTCATTTCTTCCAACTCGCACAACTTTTCTTCCAACTCGACCCGTAGAGCTTTTATTCTCTTCACCATTTTGTTTCTTCCAATCTCAACCTCTCGTCGCTTTGAGCATTTTTTGGTCTCATCCCAGAGCACGGAATACACCGCGTTCCACGCCGTCTCGAAGCCCTAAACGTCTCAAAGCCTCCACGCCGCGCACACTAGTTGGAGCATCCACGCCATCGGCACGCCTCCATGCCGTCTTCTGGTTGCTACCGAGAATTGTGAGCTTCCGGTCATCGATCTCAGCCGTTTAG 633 0.4897 MKKRQVVLKRDVANTSSSVTRNVRYGECQKNHAANIGGYAVDGCREFMASTGDGGGGALTCAACGCHRNFHRREVQTEVHGTIKDDLVDQLQDDEINSEEVQIPFQSRSPAHIISFLPTRTTFLPTRPVELLFSSPFCFFQSQPLVALSIFWSHPRARNTPRSTPSRSPKRLKASTPRTLVGASTPSARLHAVFWLLPRIVSFRSSISAV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00738 210 MobiDBLite consensus disorder prediction 158 178 - -
Vian4g00738 210 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 122 - -
Vian4g00738 210 Pfam ZF-HD protein dimerisation region 22 75 IPR006456 -
Vian4g00738 210 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Vian4g00738 210 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00738 Vian-Chr4 9430801 9436411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00738 1 79 Zinc finger-homeobox gene family AT1G18835 77.500 4.10e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian4g00738 ZF-HD_dimer 7.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00738 - - pcin:129319329 143.28