Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00726 ATGTCTGGCAGAAGAAAGTTCAGAACTTCAAAATTCAGAGAAAGTAAGATTAATGATCTGTTGTTGATGCTAAAAGCATTGTTGCCACAACAAAACCAAACAAGCGACTCAAGGGTATCAGTGAGCATGATGCAGATCATAAAGGAAACTTGCTCTCACATCAGTATGCTTCAGAAAGAGGTAAAAGAGCTTGGTGAAAGGGTAGCAGAGTTAGTGAATTCTGCATATACCAGTGATCTTGACTAG 246 0.3902 MSGRRKFRTSKFRESKINDLLLMLKALLPQQNQTSDSRVSVSMMQIIKETCSHISMLQKEVKELGERVAELVNSAYTSDLD 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00726 81 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 74 IPR036638 GO:0046983
Vian4g00726 81 Gene3D - 5 80 IPR036638 GO:0046983
Vian4g00726 81 PANTHER DNA BINDING PROTEIN 1 79 IPR044172 -
Vian4g00726 81 Pfam Helix-loop-helix DNA-binding domain 13 58 IPR011598 GO:0046983
Vian4g00726 81 Coils Coil 54 74 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00726 14 78 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 40.299 7.23e-10 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g00726 HLH 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00726 - K20474 pvu:PHAVU_009G188800g 119.012