Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00718 ATGGCAAACGAACCTGCGAGCTTCTGGACTCAAGCAAACGCTCTCCTTAGAAAGAATTTAACGTTTCAGAAGCGAAATGTTAAAACAAACGTTCGACTCATCATGTTCCCGTTCCTGTTGTGTCTGTTGCTGGTTCTGCTTCAACGCCTGGTGGATTCTCAATTGGACAAGGCAGAGAACAAGTGTGGGTGCGAGTGTGTGAGGAGAGAAGGGGACACGTGTGTGGAGGAGGAGTGCGGGATTGAGCATTCGGATTTGGACCAAGTGACAACCTGCGCCATTCCAAATCCTCCAGAATGGTCTCCTCTGTTGCAGGTGCCGGCTCCGCAGTACCGAGCTGTGAGAACGGACAATTTTCCCTTTAACGATTATCCAAACGCCTCCTGCAGGAGGAATGGCTCCTGTCCTGTCACTATGCTCTTCACTGGGACAAATCAGTCTTTTGGAGAAATTATATCTGGGAATATGATCCCAAGTTCCTTCACTGCTATAAACAGCTCTGCTGTTATGGCTAGTTTGGCAGCAAATGTCGCTGGATCAGCCTCATATACAGAAAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCAACCTATTTATTATCTTCAAAGTCAGTGCACGCAGAACTCTACATTTTCCATTTCTTTTGAGCTATCCGCAGCAATTAGCAGAGAACAAGAGTTAGTATGCGCCGAGGGCTTACGTTTATGGCGTAATAGTGCTTCTGAAGTGAACAATGAGCTATATAGAGGTTATCGGAAAAGTAACCTAGAGGAACAAATCCAAGAGATAGCTGCAGGTTATGATTTTTTGAATTCAAATGGGAGAATGTTTAATGTCAGCATATGGTACAACTCCACCTACAAAAACGACACTGGTTCTACTGAAATTGCATTGGCGCGTATTCCTCGTTCTGTTAATTTGGTATCAGACGCCTATCTGCAGTTTCTGTTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTTCAACCCCAATTAAATTTGATTTGGCTTCTCTTTTGGGTGGTCTGTTCTTTACATGGGTTATCCTGCAACTTTTCCCTAAGAAGAGGCTTGTTATTTGTGGCAAAAGACCTGCATCCATGAAGTTTTGTTTGATAATTCGTTATGCACATGGAGGGTGGATCATTGTTATGGAGCTGTATCCTGGGTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATTCCTTTAATGGTGACGCTTTGGGGACTGATGGTATGCGCTGGGGCGATCTGAGCGATAGCGAAAATGGCATGAAGGAGGTCTTAATTATAATGTTTGTGGAGTGGATTTTGGTGCTTTCCTTTGCCTATTATATCGATCAACTTTTGTCAACCGGAAGCAGAAAAAGTCCTCTTTTTTTCTTTAAAAGATTTCAGAAAAAGCCTGATTCATCTTTTCGGAAGCCTAGTATCCGAAGGCAGAAATCCAAGGTTTTTGTTCAGATGGAGAAACCTGATGTCACTCAAGAGAGGGAGAGGGTGGAGAACCTGCTACTTGAACCGACCATCAATCAAGCAATTGTATGTGACGACCTGAGAAAGGTCTACCCGGGGAGAGATGGTAACCCTGAGAAACTTGCGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTGAAGGTCTTGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAACATGATTTGCTTTGGGAATCCCTGACAGGAAGAGAGCATCTACTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTGACAGAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCAGATAAAAAAGCTGGAAAGTACAGCGGAGGAATGAAAAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAGGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTCAAGCGCGCAAAACAAGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAAGTCCTATGCGATCGATTGGGAATATTTGTAGATGGAAGCTTGCAGTGCATAGGAAACCCAAAGGAGTTGAAAGGTAGGTATGGAGGAACCTACGTGTTCACAATGACAACATCTGTGGATGATGAAAAGGCTGTAGAGAATTTGGTGCGAAGGCTTTCCCCAAATGCTAACAAGATCTACCATATCTCTGGTACACAAAAGTTTGAGCTACCAAAGGAGGATGTTAAAATAGCAGATGTATTCAAAGCAGTTGAGACTGCAAAAAGAAGCTTCACCGTTTCAGCATGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATCAAAGTTGCACGTGCGGCTCAGCCATTTGACACCTTGTCATAG 2451 0.4317 MANEPASFWTQANALLRKNLTFQKRNVKTNVRLIMFPFLLCLLLVLLQRLVDSQLDKAENKCGCECVRREGDTCVEEECGIEHSDLDQVTTCAIPNPPEWSPLLQVPAPQYRAVRTDNFPFNDYPNASCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSSFTAINSSAVMASLAANVAGSASYTENTNFLEPAFFSDQPIYYLQSQCTQNSTFSISFELSAAISREQELVCAEGLRLWRNSASEVNNELYRGYRKSNLEEQIQEIAAGYDFLNSNGRMFNVSIWYNSTYKNDTGSTEIALARIPRSVNLVSDAYLQFLLGPGTKMFFEFVKEMPKPSTPIKFDLASLLGGLFFTWVILQLFPKKRLVICGKRPASMKFCLIIRYAHGGWIIVMELYPGFALYRGLYEFSQYSFNGDALGTDGMRWGDLSDSENGMKEVLIIMFVEWILVLSFAYYIDQLLSTGSRKSPLFFFKRFQKKPDSSFRKPSIRRQKSKVFVQMEKPDVTQERERVENLLLEPTINQAIVCDDLRKVYPGRDGNPEKLAMIGLTKPTSGTAFVEGLDIRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTEAVEESLKSVNLFYGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSVDDEKAVENLVRRLSPNANKIYHISGTQKFELPKEDVKIADVFKAVETAKRSFTVSAWGLADTTLEDVFIKVARAAQPFDTLS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00718 816 FunFam ABC transporter A family member 7 613 768 - -
Vian4g00718 816 Gene3D - 543 755 IPR027417 -
Vian4g00718 816 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 16 358 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vian4g00718 816 Coils Coil 255 275 - -
Vian4g00718 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 731 IPR027417 -
Vian4g00718 816 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 731 IPR003439 GO:0005524
Vian4g00718 816 CDD ABC_subfamily_A 543 719 - -
Vian4g00718 816 ProSitePatterns ABC transporters family signature. 633 647 IPR017871 GO:0005524|GO:0016887
Vian4g00718 816 Pfam ABC transporter 544 660 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00718 Vian-Chr4 9085695 9103137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00718 550 691 Calmodulin-binding Proteins AT2G36910 24.000 8.09e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00718 - - egr:104425966 709.909