Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00716 ATGGGAAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCATCCAGATCAAATATGTCAAAGGGAAGAGAGATTGTTAATAAAAGAGAAGCAGTGGTTACTTCCAACGTGTTGGAGAACGGTTTGGCCTTAGATCCAAACCACATTGAGATTGCTACAAATGAGGAGGACCTTGAACTGGAGAATGAAGAATCAGAAGTTACTTTACCTGAGAATCAAGAAAGAGACAGTATAGGACCTGTTGATCCAGATGCACCACATGATCCAGAGAAAATCAGGCAGGAGGTAGCAGCAATAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTAGTTAGGAGACAAGCAGTTGTTACATTATGCTGTATGTATGGGATTGTAAAGTTTCAAGCACTTGCCCGTGGACTAAAGATTAGGAAGTCTAATGTTGGATTTGAAATCCATCAGAAGTGCGGTCTGTTTAAGCCTCTGGAGGGCAAACTTGGTGAGCCGGTTGGTATTTCCACAAAAATTTCAAAGTTGTCTGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAATTACAATAATGGCCCTGCGCTTGCAATATGTTAGTGGAGATCCAAATTCAGTGTTAAGCTGGTTGGAGCGCTGGTCATTATCTTGCTTTTGGAAACCAGTTTCCCAACCTAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATATTTCAAATGGAGAAGTTCAAATTTCCAAGTCAAGACGCACTAACAGGAAGCTTCCTGTTGCTAGTTTTGAACCAGTCCCAGTGCAAACAAATCCTGAATTTGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAGGTGTCAGATCCAGAGCAAGACAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAGTGCTGTTCAGCCAGAAGTTGAGTCTGAGACTCTAAAGCAGCATTTGGAAATCACGACAGTCATTCCAGGTAATGCTGGTTCAGAACAAGTGATCGTTACTTCTGAGGAAAAGATCAAGAAGGAAGAAACTTTGACTATCTCCGATGTGCCTGATATTGAAATTACTCCAAGACCATCGGTTAACAAGGAAGTGTCTGACATTCCAAGTAATTATCAAGTGTCTGTAGAATCTGAACCCTTGTCAGAGACAATTACTAAAGATAGAAACACTTCTCGTGATGAAGTTCGAAATGGGCTAGGCAATCTACCAGAGGCTATTTTTAAAGAAGACAACTCCCTATTAACAAATGGAGATTTGAGTCATAAAGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAGCATCAAATTTGACGAAACAGGAGAATGGGGAAGATGGCTTAAAGAATAGTCCAAAAGTACCAAGTTATATGGCAGCAACTGAATCCGCCAAGGCAAAGTTGAGGGCACTAGGGTCAGGATCCCCGAGGTCTGGAGAAGATGGAACTGAGAAAAACAACAACACTGCTGGTTCTGGGAGACATTCTCTGCCATCTTCAACTGGCAACAAGATTAGTTCGCAATCACCTAGGACACAGAGATCAGTTCCAGCAGGTGGCAAAGGGAGTAAAAAAAGTGACAGATCAATAGCATCTTCTAAAGGAGGGAATGGTAAAGTAATTCAAGCAGAGTGGAGGAGGTGA 1764 0.4161 MGKSPGKWIKTVLFGKKSSRSNMSKGREIVNKREAVVTSNVLENGLALDPNHIEIATNEEDLELENEESEVTLPENQERDSIGPVDPDAPHDPEKIRQEVAAIKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKFQALARGLKIRKSNVGFEIHQKCGLFKPLEGKLGEPVGISTKISKLSANTFIRKLLASSITIMALRLQYVSGDPNSVLSWLERWSLSCFWKPVSQPKKIRDSKSQRKQGNISNGEVQISKSRRTNRKLPVASFEPVPVQTNPEFEKPKRNFRKTPYQVSDPEQDNPQSELEKVKRNLRKIHNPVVESAVQPEVESETLKQHLEITTVIPGNAGSEQVIVTSEEKIKKEETLTISDVPDIEITPRPSVNKEVSDIPSNYQVSVESEPLSETITKDRNTSRDEVRNGLGNLPEAIFKEDNSLLTNGDLSHKDLTGNENQKPTRKASNLTKQENGEDGLKNSPKVPSYMAATESAKAKLRALGSGSPRSGEDGTEKNNNTAGSGRHSLPSSTGNKISSQSPRTQRSVPAGGKGSKKSDRSIASSKGGNGKVIQAEWRR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00716 587 Gene3D - 95 144 - -
Vian4g00716 587 MobiDBLite consensus disorder prediction 411 442 - -
Vian4g00716 587 SMART iq_5 97 119 IPR000048 GO:0005515
Vian4g00716 587 SMART iq_5 120 141 IPR000048 GO:0005515
Vian4g00716 587 PANTHER IQ-DOMAIN 5-RELATED 1 546 - -
Vian4g00716 587 Pfam Protein of unknown function (DUF4005) 481 566 IPR025064 -
Vian4g00716 587 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Vian4g00716 587 MobiDBLite consensus disorder prediction 469 485 - -
Vian4g00716 587 MobiDBLite consensus disorder prediction 258 278 - -
Vian4g00716 587 MobiDBLite consensus disorder prediction 251 321 - -
Vian4g00716 587 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515
Vian4g00716 587 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Vian4g00716 587 MobiDBLite consensus disorder prediction 58 90 - -
Vian4g00716 587 ProSiteProfiles IQ motif profile. 122 144 IPR000048 GO:0005515
Vian4g00716 587 MobiDBLite consensus disorder prediction 456 587 - -
Vian4g00716 587 MobiDBLite consensus disorder prediction 519 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00716 Vian-Chr4 9057487 9062770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00716 1 587 IQD Protein Family AT1G74690 43.790 9.81e-123 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00716 - - gmx:100786022 926.006