Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00715 ATGGGTTCTGAAGGGGGAACTAGCAATGGAGGGTATGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGAATTCCGTTGATGACACTTTGTTGGTGTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAGAACAACAGCAGCTTGATGGAGGATCAAGATTCGTGGACAGAAAATACCAATGCTAGCCAGAAGATGGTGTCGGATGATAGCCACTCCGACAATGAAGCCACTGCTCCAAACCGTAGGAGAAGATCCAGGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCAGAGCAGGAGCAGGAAGAGGTTGCCATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAGTTCTGTGAACTCATTTCATTTTGAATCTCCTTTGGTTCCAACCAATTTAGATTCCAAGGCTGAAGGCAAGAGGGTTGTCTCCAATGATTCTGAAAATAAGGTTACCAAACCAAAGGATATGAAGTGGGATTTTGGAAATTTGGATGCTTCATATCTCAACTCCAAAGGAAAAATAAGCTCAGAACTTGATAAGAAGGCCGAGCTTGATACTGATTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAATTGAAGGCTAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGTTGAATTGAGCAAAAGCTCAAACAAGAGAGGAAAATTTGAGTGTGCTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTCGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGACTTGGAAGCAGACCTCTCCCCTGATCCAACAACAGAAAGTAAGTTCCTGAAGAAGGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGATTTGAAAAAGGGGAAAGTTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGACAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGCCTAATGGGTCTGATATTGCTAGAAACTGTCAAAGTCAAAGAGTTGTACTAGGGAGAGAAGACCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGCCATGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA 1407 0.4378 MGSEGGTSNGGYGLRENPKKTWRFTNSVDDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLMEDQDSWTENTNASQKMVSDDSHSDNEATAPNRRRRSRRRRTRYVAPSTSSVSFVSEAEQEQEEVAMSLMMLSRDVSPWCGLSSVNSFHFESPLVPTNLDSKAEGKRVVSNDSENKVTKPKDMKWDFGNLDASYLNSKGKISSELDKKAELDTDSAFEDNGIDDNRNNKYTSIKAKYLDSELKASSSKSWVKNKSPEVELSKSSNKRGKFECATCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTDLEADLSPDPTTESKFLKKEYVEEHEMVTVTTTTTGFDNEEERERDLKKGKVHECPICLKVFPSGQALGGHKRSHHLPNGSDIARNCQSQRVVLGREDPEIRDFFDLNLPASTEEEGNSHGHAEPYKPWWVVGGSSHKQEALIGLISN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00715 468 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 6 450 - -
Vian4g00715 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 373 395 IPR013087 -
Vian4g00715 468 SMART c2h2final6 280 302 IPR013087 -
Vian4g00715 468 SMART c2h2final6 373 395 IPR013087 -
Vian4g00715 468 SMART c2h2final6 37 59 IPR013087 -
Vian4g00715 468 MobiDBLite consensus disorder prediction 67 115 - -
Vian4g00715 468 SUPERFAMILY beta-beta-alpha zinc fingers 39 302 IPR036236 -
Vian4g00715 468 Pfam C2H2-type zinc finger 372 396 - -
Vian4g00715 468 Pfam C2H2-type zinc finger 280 304 - -
Vian4g00715 468 Pfam C2H2-type zinc finger 39 60 - -
Vian4g00715 468 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Vian4g00715 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Vian4g00715 468 Gene3D Classic Zinc Finger 277 395 - -
Vian4g00715 468 ProSitePatterns Zinc finger C2H2 type domain signature. 282 302 IPR013087 -
Vian4g00715 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 307 IPR013087 -
Vian4g00715 468 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00715 Vian-Chr4 9035316 9036722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00715 9 435 C2H2 Transcription Factor Family AT1G26610 30.962 1.15e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian4g00715 zf-C2H2_6 3.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00715 - - vra:106757260 872.078