Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00712 ATGCTACAGTTACCTCCTAAACGTCGGCAAATTATAAGACTGTTGATAAAGAGATCGGATATTGTTGCTGCTAAAACTGCAATTGGGGTATTAAGTATTGATGCAACTGAAAGGGAAAGTGAAGAAATAGCTTTGGAAAATTTGGATGAAACTGATGGCAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATAGTTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTGTGTGTGAGAAAGGTATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAATCTCATTTAGGTCGTCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCACAAAGCCCAACTCTAATGTTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCGGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTAAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGAAAATATGATGCGAAGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGGCTCATCTTTTAAAAGAGATAATAGTGAAGAGCAATCCACATGCAAAGATGCAGAAGGGGAAACACAATTGGATTTGCAACCTTCTGCGGTAAATTCAAATGATTCAGAAGCAAATGAAGATGATAAATCTGGGGAGGGAACTTCTTTTCTTAACAAGTCAATTCAGAGTTTTAATGTTTTGGCTGATGGCGTCTCCTGCCAAGATTTAGGCACAGGTTTAGTTCTGGATGGAAATTGTGATGCTGATGTTTTTGAAGATGTGGAGAGATATCCTGGAAAGAGTTTAGAAGACGCACATCCATTGCAGGATATAAAAACTGTTTCAACAACAGAAGCAGATGATAACCAGTCTGCTCAGCTGGTTGAAGCCGAAAGTCATTGTTCTAATCAAATTGATTTTCTGCGATTTGAGGTGAGCCCTTACACCGGAAGGATCCACTTGTATACTTGCATTTTGGGTACCGATAAACGACCACAACCACTTTATGAAAATTTTCGACCAGAAGAACTTGAGTTGTTGAGTCCTGTTGCTCCTGATCAGAAACAGGTTCATGATGAAAAACAAAAAATAGAGTCTGTTAAGGACAACCCCTTTTATAGGCATGCTCTTCTAGCTTTTGCGGAAGAATGGAAGAACTTAAGGTCAATTGAACGCCGGAAATTAATTGGAAAACCGTTGCAACTCCCTTTGGCTGTTGAATTATGCTATTTGAGTGAAAGCAACGACTACAACAACAATGGATTATTAAATGGTGGAAGTAAAAGGCGCAAGACACCCATAATAGAGGTTAGCTATCCATTACCTCCTGATGCAGTTTGGAAGAAGGTTTATCTGCGAAGTGGCCTCGGTAAGAGGGAAAGAGAATATACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAACGTTGTCAAAAGCAGTGCATGGGTAAGAATGCCAAGAGACCTGAATTTCTAGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGATTGAGAACTAGCAACCGTTTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAACTGCCAATTAGACTGTCATAAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGACGAGAATTTATACAGAAAATAGCACCAAATATTGCTAAGCGGAAAAACATGTTTGAGAAGCTTGTCAATGAACCAACTGAAGGGAATGCATGGCATGCTGATCACATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTAGAGAATATGCGTACTCTTTGTGTGGCCTGCCATTCTGATGTGACTGCCGCACAATGTTCTGAACGATCTAAAGCAAGAGTGAATGCGAAGAAAAAACTGAAAGAGTTAATGGGCAGTATCAAAATTGGTATGAAGTGTTCTGCTGTCACTAATATTAAGGACCATAGGGCTATCGATGAACGAGGGAGTAGTGTAATCGAGGATGAGCTTTTACTCGAGGTTCCTGGAAGTGCCTATTCTATAGCAGACAGCTAA 2229 0.4002 MLQLPPKRRQIIRLLIKRSDIVAAKTAIGVLSIDATERESEEIALENLDETDGKLSYQELGIAKLSGFREWLALHPIVAGSENASKMIIFAHHHKVLDGVQEFVCEKGISFVRIDGNTLARDRQSAVISFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPTLMFQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAKKEIEVEGISYLGSSFKRDNSEEQSTCKDAEGETQLDLQPSAVNSNDSEANEDDKSGEGTSFLNKSIQSFNVLADGVSCQDLGTGLVLDGNCDADVFEDVERYPGKSLEDAHPLQDIKTVSTTEADDNQSAQLVEAESHCSNQIDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLSPVAPDQKQVHDEKQKIESVKDNPFYRHALLAFAEEWKNLRSIERRKLIGKPLQLPLAVELCYLSESNDYNNNGLLNGGSKRRKTPIIEVSYPLPPDAVWKKVYLRSGLGKREREYTQGWSVTDEPLCKRCQKQCMGKNAKRPEFLEDLFCNLVCYEEYRLRTSNRFLREELFKIEHGVCTNCQLDCHKLVKDTRPLSLERRREFIQKIAPNIAKRKNMFEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHSDVTAAQCSERSKARVNAKKKLKELMGSIKIGMKCSAVTNIKDHRAIDERGSSVIEDELLLEVPGSAYSIADS 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00712 742 CDD HNHc 633 673 IPR003615 -
Vian4g00712 742 Gene3D - 18 276 IPR027417 -
Vian4g00712 742 Gene3D - 564 696 - -
Vian4g00712 742 Pfam HNH endonuclease 639 673 IPR002711 GO:0003676|GO:0004519|GO:0008270
Vian4g00712 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 246 IPR027417 -
Vian4g00712 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 73 227 IPR001650 -
Vian4g00712 742 SMART helicmild6 98 181 IPR001650 -
Vian4g00712 742 MobiDBLite consensus disorder prediction 242 282 - -
Vian4g00712 742 Pfam Helicase conserved C-terminal domain 80 181 IPR001650 -
Vian4g00712 742 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 2 690 - -
Vian4g00712 742 CDD SF2_C_SNF 63 192 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00712 78 234 RAD5 or RAD16-like Gene Family AT1G11100 33.540 2.38e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00712 K25861 - gmx:100788690 1209.9