Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00702 ATGGCAATGGCTGCTGTTCTGCGTCGCGAAGGGAGGCGTTTGACCCAACCAATCAACGCTCTCCATTCCTCTCTCATCTCTCAAGACCAAGCTCCTCATGGTTCGCGCTCCGTTTCCACCCAAGTAGTGAGGAACCGAATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTTCGAGCCGTTCAAACAAGAGCTGAAAATTCCCGTGGCCTCTGGCAACCATTCACTGCCCTTCTCGGTGACAATCCAAGTGCTGATGTTAAGAAGAATGTTGTTGTTACCGTTTCCTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACATCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCCGGGCCTGATAAAGAGACAAAATATGTCATACTGGGAGAGAAGGCTAAGGCTCAATTGTTACGTGACTCAAAGAAAAATATCGAGCTCTCCCTTACTGAATTGCAGAAGAATCCTCTGAATTATACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGATGCATTAAGGATTGTTTTCAACAAATTTCATTCTGTTGTTTCATTTTTGCCAACAGTGTCAACTATACTATCTCCTGAGGTTATCGAGAGAGAGGCTGAATCAGGAGGAAAGCTTGGGGAACTAGATTCATATGAGATTGAAGGTGGCGAGACAAAATCTGAAATTCTTCAGAATCTGGCTGAGTTCCAGGCAGGTCTAAACATGAGCGGTGTATGGGGGATGGATGTATGTGTTCTTTTATCTGCACGGGAAGAGGTCATGTACAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGAATGTCAGCCATGGACAGCTCTAGTAGGAACGCTGGGGACATGCTTGATCGTCTCACCCTCACTTATAACAGAACTCGTCAAGCATCTATCACCACAGAATTGACAGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 1014 0.4527 MAMAAVLRREGRRLTQPINALHSSLISQDQAPHGSRSVSTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPSADVKKNVVVTVSSDKGLCGGINSTSVKISRVLHKLNSGPDKETKYVILGEKAKAQLLRDSKKNIELSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVSFLPTVSTILSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQAGLNMSGVWGMDVCVLLSAREEVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELTEIISGASALEG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00702 337 FunFam ATP synthase subunit gamma 63 294 - -
Vian4g00702 337 NCBIfam ATP synthase F1 subunit gamma 39 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 PANTHER ATP SYNTHASE GAMMA CHAIN 28 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 FunFam ATP synthase gamma chain 290 332 - -
Vian4g00702 337 Gene3D ATP synthase, gamma subunit, helix hairpin domain 38 94 - -
Vian4g00702 337 Gene3D - 95 225 - -
Vian4g00702 337 Coils Coil 148 168 - -
Vian4g00702 337 ProSitePatterns ATP synthase gamma subunit signature. 321 334 IPR023632 -
Vian4g00702 337 PIRSF ATP_synthase_gamma 6 335 - -
Vian4g00702 337 CDD F1-ATPase_gamma 39 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 40 335 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 Pfam ATP synthase 41 253 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 Pfam ATP synthase 275 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 PRINTS ATP synthase gamma subunit signature 282 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 PRINTS ATP synthase gamma subunit signature 313 334 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 PRINTS ATP synthase gamma subunit signature 97 116 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian4g00702 337 Gene3D ATP synthase, gamma subunit, helix hairpin domain 240 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00702 Vian-Chr4 8808387 8813915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00702 17 335 Primary Pumps ATPases AT1G15700 30.748 2.94e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00702 K02136 - gmx:100813657 558.91