LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00676	ATGGAAGAGGAAGAACCGATGCAGCAACCGCTCACAGACTCGTCGCTAACCACCCATTCATCAACTTCCACTGCTTCCGATGAAGAGCAACCCCACTCAGAAACCCTATCTCTGCATTCTTCTTCTCATATGCAAAGAAGCTCTACCGCAAGTAAGCTTGGTCAAGATGAGAGTAAGTCACCTTATAAAGGGATTCTGGACGTGGTTTATGAGCCGTTGTTGTTGCTTCTTGTTCTTATGAGTGCTGAAGATATAGCACAGCATTCTGATGAGGAAACTATTGTAAAGGAGACAGTAGAGGCACCTCAAAAACAGACAGAAAGTCAACTTCAGATGTCTGTTTGTTCAACTTCATCGTCTAAACTATCACCAACTTCTGTATCAATGTATTTATCATCTGCCCCTAGTTCAAGTGTACCACAACAGAGACCATCTCCCAAAGCTGTAAAAGTGCAAAAAATGGACAAAGGAACTCCTTCTGGTGATACAACCTTGTCTTCAGTTTCTGTTTCAAGGACATCTGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGTTATTACAGGTGTACCCATTCAAATTGTTGTGCAAAGAAGATTAAATTTTGTGACCATTCAGGATATGTGATAGAGATTGTTTACAAAAGTCAACATAGTCATGATCCCCCACACATAGTTGATTCTACTAAGGAAAGTAAATTCCTGCCTTACAGTGAACCTAAAATAAAATGCAGTATTCCAAAGCAGTCTAGCAGAGTTCAAATTGATTCTGATCCATCTTCTCCAAGAAAACCTTTATATGAATCACCTTGCAGTGCCAATAAAAATCAAGAAAACTCATCCCATGATGAGAATGACAAAGTTTTGTTGAAAAAAGAGCATGTTAATGACCCTGAGCCAAAAAGAAGGCAAGTTGCATATGAATTAATTTTTTTTCATAGGAAATTTTTGAGGAATTTACTCTTTTTCTTGTACATGTGGCTGGATGTAATGTCTAATGCTCTTGTCCTTAATATGATAACTAGACTGAACAAAGGTGATTTAACATGCTTGGATTCAGCAATAAAACCTGGAAAGAAACCGAAGTTTGTTGTACATGCAGCAGAGGATATGGGGATATCAAGTGATGGATACCGATGGCGCAAATATGGACAAAAATTGGTGAAGGGAAACCCACATTTCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTTCGAAAGCACATTGAGACTGCTGTGGATAACGCAAAAACTGTGATTATAACATACAAGGGAGTGCATGATCATGACATGCCTGTGGCCAAGAAACGACAGGGTCCACCAAGGGCTTCCCTTGTGGCTGCTGCAGCTCCTGCTTCAATGAAAAATTTGCACTTCAAAAAAGGTGGTTTGGTACAAAACGAGGAAACTTCTTCTGCTCAATGCTCAGAGGACACAGAAGATGAAGCATTGGACCTTGGTGGTGAGAAAGCAATCGAATCAGCTCGAACTCTTTTAAGTATTGGCTTTGAAATTTAA	1557	0.4027	MEEEEPMQQPLTDSSLTTHSSTSTASDEEQPHSETLSLHSSSHMQRSSTASKLGQDESKSPYKGILDVVYEPLLLLLVLMSAEDIAQHSDEETIVKETVEAPQKQTESQLQMSVCSTSSSKLSPTSVSMYLSSAPSSSVPQQRPSPKAVKVQKMDKGTPSGDTTLSSVSVSRTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCCAKKIKFCDHSGYVIEIVYKSQHSHDPPHIVDSTKESKFLPYSEPKIKCSIPKQSSRVQIDSDPSSPRKPLYESPCSANKNQENSSHDENDKVLLKKEHVNDPEPKRRQVAYELIFFHRKFLRNLLFFLYMWLDVMSNALVLNMITRLNKGDLTCLDSAIKPGKKPKFVVHAAEDMGISSDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNAKTVIITYKGVHDHDMPVAKKRQGPPRASLVAAAAPASMKNLHFKKGGLVQNEETSSAQCSEDTEDEALDLGGEKAIESARTLLSIGFEI	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00676	518	MobiDBLite	consensus disorder prediction	100	145	-	-
	Vian4g00676	518	MobiDBLite	consensus disorder prediction	257	297	-	-
	Vian4g00676	518	FunFam	WRKY transcription factor	371	446	-	-
	Vian4g00676	518	MobiDBLite	consensus disorder prediction	1	61	-	-
	Vian4g00676	518	MobiDBLite	consensus disorder prediction	100	169	-	-
	Vian4g00676	518	SUPERFAMILY	WRKY DNA-binding domain	380	445	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	ProSiteProfiles	WRKY domain profile.	176	234	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	Pfam	WRKY DNA -binding domain	387	442	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	Pfam	WRKY DNA -binding domain	177	231	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	SUPERFAMILY	WRKY DNA-binding domain	172	234	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	ProSiteProfiles	WRKY domain profile.	380	445	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	SMART	WRKY_cls	175	233	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	SMART	WRKY_cls	385	444	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	Gene3D	WRKY domain	370	446	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	Gene3D	WRKY domain	161	235	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vian4g00676	518	MobiDBLite	consensus disorder prediction	8	56	-	-
	Vian4g00676	518	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	107	478	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00676	Vian-Chr4	8193970	8197125	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00676	81	518	WRKY Transcription Factor Family	AT4G30935	45.067	6.42e-107	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vian4g00676		WRKY	1.7e-22	CL0274