Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00674 ATGCCAGATTTAGGGAACCTCGTTCTCTCTTCCACTCTCACTCTCTCTCACTGCTCCTCCGATGTCGCCGAAGCTCCCGTCAAAACCCTACCCAATGCCTTCGCTTCCGAGCCCGCCTTCGAGCCTCGGGTTTTGAAACGCACCCGCGGCTCCCTGGATCGGGTCAAGAAGCCCGCTTCCGACAAAGCTTTTCAGGATCGCCTCAAAGATCCCTTCTCTCATCCGTTTCTTGTTGGCGCTCCCAAATTGTGGGAGTGTTGTTTTTGCCGCCATTTTATCTACCCTGGGGAGGAGCTGTTGTGTTCGGTTCGCGGATGCGACGCGCGGTGCCATTCTGAATGTGCAAAAGATTCTGGTGGAGCTACCAGTCTGAAAAAGTACAAGTGTCCACAGCATGTAGACGCAGTGTTGCCGCTAAAAGATCATCCTGGGCTAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGCTTGGATAGGAAGCTAGATTCCCGGCCATATTCAAATTCAGTTATTTGCTGGCTGACAGGAATGTTGTATTTGTTGGATGAGCAGCCTGATGCTTCAACAAGTGACATTTCGGAAGTATTCTGTCGCTTGCCTCTTCCGTTTATCAGTGAGGAGTTTAAGATTGATTCCACCTGGAAAGACATGGACAGTAAGATGGAGCAGCCACCAGCATATGTACACATAAGACGGAATATATACTTAGTAAAGAAGAAACGTAGTAATGTGGATGATGGTGCAGGGTGCACCAGTTGCAGCTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGTTGCTCAAAAGCGTGTCGCTGCTCTGAAAATTGCAACAATCGTCCATTTCGCAAGGAGAAAAATATCAAGATAGTCAAGACTGAGCATTGTGGATGGGGAGTGGAGGCTGCTGAAACCATTGATAAAGGTGGATTTATAGTTGAGTATATTGGAGAAGTAATTGACGATGCTTTATGTGAGAAGAGGCTCTGGGATATGAAATACATGGGTGTACAAAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATTGATGCAACTTTCAAAGGAAATACTTCACGTTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAAAAATGCATTTATGCTGCCAATCGTGTATCTCTGCTCTGTGGGATTATTTTAAAATCCGCGGAAAAACAATCCTACAATTACCATTTCCCCATCTTCATTACACTGTTATTTTTACTATGCTGCTATATTCTAAATGAGATTGAAGATGTATTTGACCCTTTAAGACCATTAAGACTAATTTGCTTCACAATTTGTAAGATGTAA 1335 0.4442 MPDLGNLVLSSTLTLSHCSSDVAEAPVKTLPNAFASEPAFEPRVLKRTRGSLDRVKKPASDKAFQDRLKDPFSHPFLVGAPKLWECCFCRHFIYPGEELLCSVRGCDARCHSECAKDSGGATSLKKYKCPQHVDAVLPLKDHPGLAVCWRHPSDWRLDRKLDSRPYSNSVICWLTGMLYLLDEQPDASTSDISEVFCRLPLPFISEEFKIDSTWKDMDSKMEQPPAYVHIRRNIYLVKKKRSNVDDGAGCTSCSSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKNIKIVKTEHCGWGVEAAETIDKGGFIVEYIGEVIDDALCEKRLWDMKYMGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKCIYAANRVSLLCGIILKSAEKQSYNYHFPIFITLLFLLCCYILNEIEDVFDPLRPLRLICFTICKM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00674 444 Pfam SET domain 300 376 IPR001214 GO:0005515
Vian4g00674 444 SMART set_7 289 409 IPR001214 GO:0005515
Vian4g00674 444 SUPERFAMILY SET domain 208 380 IPR046341 -
Vian4g00674 444 ProSiteProfiles AWS domain profile. 246 289 IPR006560 GO:0005634|GO:0042054
Vian4g00674 444 ProSiteProfiles SET domain profile. 289 413 IPR001214 GO:0005515
Vian4g00674 444 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 441 IPR025787 -
Vian4g00674 444 SUPERFAMILY FYVE/PHD zinc finger 70 134 IPR011011 -
Vian4g00674 444 Gene3D SET domain 200 397 IPR046341 -
Vian4g00674 444 PANTHER SET DOMAIN PROTEINS 57 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00674 Vian-Chr4 8170591 8175762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00674 270 404 C2H2 Transcription Factor Family AT2G23740 32.680 4.46e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian4g00674 SET 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00674 - - pvu:PHAVU_009G195400g 660.988