Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00671 ATGGATCTTAGAAGAAACCAATTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCTAATTACAATTGGTCTTATTTAGTTTATCTGGATTTGTCAGAGAATCTGCTGGATGGAGAAATTTCCCAAAATTTGATTGAATACAAGAACCTAAAACACCTTAATATTGCCCACAATAGATTTAGCAGACAGAAATTCCCCAAGGTTGAAATGCTATCTGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTAAAATCTCCCAACTTCGAAATTTGAGTACACTTGATGTTTCTATGAATCATCTAACAGGGAAAATCCCTTCACTAAAAAATAGAAACCTCCGAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATATCCCATCATCAGTCATAGAGAAACTTCCTTCAATGCAGAAATACAACTTCTCTTATAATAACTTATCCTTCTGTGCTTTGGAAATCAAATCAGCCATCATCCAAAGAGCATTCTATGGATCAGTGAACAGTTGCCCCATTGCTGCAAACCCAAGTCTTCTGAAAAAAAGAGCCACTGAAAATAAGGGAATGAAGCTAGCTCTAGCATTGACCTTCTCAATGATCTGCTTGATTGCTGGGCTTATGCTTCTAGCTTTTCGTTGCCATAAGAAAACAGAACCATGGCCTGTTAAACAAACTTCATACAATGAAGTGCATAACATGTCAGGTCCCTTTTCATTCCACACTGACTCAACAACATGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGACAAGCCACTATTAAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTCGGGCCAGTTTATAGAGGATTTCTACCAGGTGGTATTCACGTAGCAGTAAAAGTTCTGGTGGTTGGATCCACTCTTACGGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCCAATCTTGTTCCTCTAACAGGATATTGTGTAGCTGGGGATCAGAGAATTGCTATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTCTATGACTTGCCACTTGGTGTACTTCAAAGTACAGATGACTGGAGCACAGATACATGGGAAGAAGATGTGAGTAATGGGATTGAAAATGCTGGATCAGAAGGAGGTCTCACAACTTGGAGATTTCGCCATAAGATCGCACTTGGCACTGCTCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTATATTTGGATTACAACTTAGAGCCAAGACTCTCTGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGCTTGGATGAAGAGAGTGCACTTTGTTCACCTGGCTATGTTCCACCAGAGTTTTCTCAACAAGAATTTTGCACCTCAACTCCAAAATCTGATGTGTATTGCTTTGGGGTTGTTCTCTTTGAGCTGCTATCTGGGAAGAAACCGGTTGCAGATGATTATCCTGATGTAAAGGAAGCAACTTTGGTTAGCTGGGTGAGAGGGTTAGTGAGAGAGAACAGAGGTTCAAGAGCCATTGATCCAAAAATTCGTTATACTGGAGCAGAAGAGCAAATGGAAGAAGCCCTTAAGATTGGTTATCTCTGCACTGCTGATCTTCCTTCCAAGCGACCCAGCATGCAGCAGGTACTTGGACTTCTTAAAGACATCGAACCTTCTAATTAG 1785 0.4073 MDLRRNQFEGRISQVHSISNYNWSYLVYLDLSENLLDGEISQNLIEYKNLKHLNIAHNRFSRQKFPKVEMLSGLEYLNLSKTSLIGYIPAKISQLRNLSTLDVSMNHLTGKIPSLKNRNLRVLDLSNNNLSGDIPSSVIEKLPSMQKYNFSYNNLSFCALEIKSAIIQRAFYGSVNSCPIAANPSLLKKRATENKGMKLALALTFSMICLIAGLMLLAFRCHKKTEPWPVKQTSYNEVHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQSTDDWSTDTWEEDVSNGIENAGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEESALCSPGYVPPEFSQQEFCTSTPKSDVYCFGVVLFELLSGKKPVADDYPDVKEATLVSWVRGLVRENRGSRAIDPKIRYTGAEEQMEEALKIGYLCTADLPSKRPSMQQVLGLLKDIEPSN 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00671 594 Pfam Protein tyrosine and serine/threonine kinase 292 584 IPR001245 GO:0004672|GO:0006468
Vian4g00671 594 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 590 - -
Vian4g00671 594 Gene3D Ribonuclease Inhibitor 1 179 IPR032675 -
Vian4g00671 594 Gene3D Transferase(Phosphotransferase) domain 1 394 594 - -
Vian4g00671 594 Gene3D Phosphorylase Kinase; domain 1 248 363 - -
Vian4g00671 594 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Vian4g00671 594 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 42 132 - -
Vian4g00671 594 SUPERFAMILY L domain-like 2 160 - -
Vian4g00671 594 FunFam Putative LRR receptor-like serine/threonine-protein kinase 249 363 - -
Vian4g00671 594 ProSiteProfiles Protein kinase domain profile. 288 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00671 594 SUPERFAMILY Protein kinase-like (PK-like) 273 587 IPR011009 -
Vian4g00671 594 Pfam Leucine Rich Repeat 119 137 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00671 Vian-Chr4 8113907 8115691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00671 22 591 Receptor kinase-like Gene Family AT4G39400 35.690 1.75e-90 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vian4g00671 PK_Tyr_Ser-Thr 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00671 - - gmx:100807051 1050.81