Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00662 ATGTACATCAAACAGGTTGTGATCGAAGGTTTTAAGAGTTATCGAGAGCAAATTTCCACAGAGCCTTTCAGCTCTAAAGTGAACTGTGTTGTTGGTGCTAATGGATCTGGGAAGACAAACTTTTTTCATGCCATCCGTTTTGTATTAAGTGATCTCTTTCAAAACCTACGTGGTGAAGATCGACAGGCACTACTCCATGAAGGAGCTGGACACCAAGTTTTATCTGCTTTTGTGGAGATTGTCTTTGATAATTCAGACAACCGTATCCCGGTTGACAAGGAGGAAGTGCGATTGCGTCGGACTATTGGTTTAAAAAAGGATGAGTATTTTCTTGATGGAAAACACATAACGAAAACTGAAGTGATGAACTTGCTGGAGAGTGCTGGGTTCTCCCGTTCAAATCCTTATTATGTTGTACAACAAGGAAAGATAGCATCATTAACCTTGATGAAAGACTCTGAACGACTGGACTTGCTTAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGCCGTGAAAGTTTGAAAATAATGCAGGAAACTGGTAACAAAAGAAAGCAAATAATCCAAGTTGTACAGTATTTAGATGAAAGGCTGAAAGAACTAGATGAGGAAAAGGAGGAACTTAGAAAATATCAACAGCTTGACAAACAAAGAAAATCATTAGAATATGCTATTTTTAGCAAAGAAGTTCAAGATGCTCAGCAGAAACTTACAGAGATAGAAGATGTTCGGGCCAAGGTTTCTGAAACATCAGCAAAAATGTATAATGATGTTCTTGATGCCCATGAGAAATCCAAAGATTTAGAGAATACATTAAAAGATGTATCAAAAGAACTTCAAAACTTTAACAAAGAAAAAGAAGCTATTGAAAAGCGACAAACAGTTGCATTAAAGAAGCACACAGAACTTGAGCTTGATGTCAAAGACTTGCAAGAGAAGAACTCTGGAAACATCCGAGCCAAGGAAGATGCTGCAAGACAACTGGAGATACTTGAGAAAGAAATTCAAGATTCAACCATTGAACTGGGCAAAATCATTCCCTTACATGAGGATCAAATTCAGAAAGAAAAAGACATTGCCATGCAAATAATGGAGCGTGAAAAGAAACTCAGTATACTCTATCAAAAGCAAGGTCGAGCTACCCAGTTTTCAAGTAAAGCTGCTCGTGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAACGAGTGCATTCTTCAAATAAGGGGCAGGAGCAAAAGCTTTTGGATGAAATTGATCGGCTTGAAAAAGAACTGCGTGATTGTGATGAAAACATAAATAAACGTAAATCAGATATTACTGTTTTCGAATCTGGCATTGCTGAGTCCTTTAAAGGGCTTAATCATTTCAAATTGGAGAGAGACAAGTTAAATCTTGAGAGGAAGTCCCTATGGACAAAGGAGAATGAAATTACTGCTGAAATTGATAAGCTGAGTGCAGAAGTTGAGAAGGCTGAAAAGAATCTTGATCATGCAATTCCTGGTGATGTGAGAAGAGGGCTGAATTCAGTTAGGAAGATTTGCAGGGAGTATAATATTTCTGGAGTTCATGGTCCAATTATTGAGTTGCTGAATTGTGATGAAAAGTTTTTCACTGCCGTTGAAGTTACGGCAGGAAACAGCTTATTCCATGTTGTTGTTGAAAATGATGACAAGTCAACCCAGATAATTAGACATCTTAATTCACAGAAAGGTGGTAGAGTTACATTTATTCCGCTTAACAGAGTAAAGGCTCCACGCATCACTTATCCGCAGAGTTCTGATGTCATACCTCTTTTGAAGAAATTGAATTTTAAACATGACTATACTCCTGCATTCAGTCAGGTTTTTGCGAGAACGGTCATCTGCAAAAATCTGGATGTGGCTTCAAGGGTTGCTCGTACTGATGCTCTGGACTGCATCACACTGGATGGTGATCAAGTAAGCAAGAAAGGTAGTATGACTGGAGGATTTTATGATCACCGAAGATCAAGATTAAGGTTTATGAATATCATTACGCAGAATAAAGGCACTATTCGCATTAGAGAGGAGGAATTGGAGAAAGTTAGATTTAATCTACAGGAGATAGACCAAAAGATTAATGAACTTGTTGCTGAGCAGCAGAAGATTGATGCCAAGCGTGCTCATGACAAATCTGAGATAGAACAGCTTAAGCAAGATATTGCTAATGCTAATAAGCAGAAGCAGTTGATTTCTAAAGCACTTACAAAAAAGGAGAAGTCTGTTGGGGATGTCCAGAACCAGATTGAACAGCTTAAGGCTAGTATCGCAACAAAAAATGCTGAGATGGGCACTGAGCTAATTGATCATTTAACACCAGAGGAAAAGAAACTCTTGTCAGATTTGAACCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTTGCTTGCAAGACTGACCGTATTGAGACTGAAGCAAGGAAAGCAGAACTGGATACCAATCTTACTACTAACCTTAGGAGAAGGAAACAAGAGCTGGAGGCTGTAATATCGGCCGTGGATTCTGACTCTCTGGTTGGTGAGGCTGAATCCAAGGGGCAGGAGCTTAGTGATGCTAAAATGTTGGTTGATGACTTAACAGAGCAGCTTAGAAGAGTTGCTGAAAATATAAATGATCGAATGAGGCAAATTAAAAAGATTAAAGATGAATTGAATAAATTGAAGTCTTTGGAGGACGAATATGAAAGGAAACTTCAGGAAGAAGCAAAAGAATTAGAGCAATTGCTGAGTAAAAAAAATACATATGCAGCTAAAGAAGAAGAGTATGCCAAGAAAATTAGGGAACTGGGACCATTGACATCAGATGCTTTTGAGGCGTATAGACGACGGAATATAAAAGATTTGCACAAAATGCTGCACAGGTGCAATGAGCAATTGCAGCAGTTCAGTCATGTAAACAAGAAAGCACTGGACCAGTATATAAATTTTACAGAACAACGAGAAGAACTTCAGAAAAGACAGGCCGAACTTGATGCAGGAGATGAGAAAATTAGGGAGCTGATATCAGTGCTAGATCAGCGGAAGGACGAATCTATAGAACGCACTTTCAAAGGTGTTGCTAGGCATTTTCGGGAAGTATTTTCTGAACTTGTGCAGGGTGGCCATGGTCATCTGGTTATGATGAAAAAGAAGGATGGTGATCATGATGACGATGAAGATGAGGATGGTCCTCGTGAAGCAAATCCAGAGGGGAGAGTAGAAAAATACATTGGAGTGAAAGTGAAGGTCTCATTTACTGGACAAGGGGAAACACAGTCCATGAAACAGTTGTCTGGGGGTCAAAAAACTGTTGTTGCCCTTACTCTTATCTTTGCCATACAGCGATGTGATCCTGCTCCCTTTTATCTATTTGATGAGATTGATGCAGCTCTGGACCCACAGTACCGAACTGCTGTTGGAAATATGATTCGTCGCTTGGCTGACGTAGCAAACACTCAATTTATCACAACAACATTTCGCCCAGAGCTAGTGAAAGTTGCTGACAAAATATACGGTGTAACACATAAAAACAGGGTCAGTCGTGTTAATGTTGTATCCAAAGAAGATGCATTGGAATTTATTGAGCATGACCAGACGCACAATGCTGAATAA 3612 0.3929 MYIKQVVIEGFKSYREQISTEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRGEDRQALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYAIFSKEVQDAQQKLTEIEDVRAKVSETSAKMYNDVLDAHEKSKDLENTLKDVSKELQNFNKEKEAIEKRQTVALKKHTELELDVKDLQEKNSGNIRAKEDAARQLEILEKEIQDSTIELGKIIPLHEDQIQKEKDIAMQIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLERVHSSNKGQEQKLLDEIDRLEKELRDCDENINKRKSDITVFESGIAESFKGLNHFKLERDKLNLERKSLWTKENEITAEIDKLSAEVEKAEKNLDHAIPGDVRRGLNSVRKICREYNISGVHGPIIELLNCDEKFFTAVEVTAGNSLFHVVVENDDKSTQIIRHLNSQKGGRVTFIPLNRVKAPRITYPQSSDVIPLLKKLNFKHDYTPAFSQVFARTVICKNLDVASRVARTDALDCITLDGDQVSKKGSMTGGFYDHRRSRLRFMNIITQNKGTIRIREEELEKVRFNLQEIDQKINELVAEQQKIDAKRAHDKSEIEQLKQDIANANKQKQLISKALTKKEKSVGDVQNQIEQLKASIATKNAEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKTDRIETEARKAELDTNLTTNLRRRKQELEAVISAVDSDSLVGEAESKGQELSDAKMLVDDLTEQLRRVAENINDRMRQIKKIKDELNKLKSLEDEYERKLQEEAKELEQLLSKKNTYAAKEEEYAKKIRELGPLTSDAFEAYRRRNIKDLHKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDEDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADVANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVVSKEDALEFIEHDQTHNAE 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00662 1203 Coils Coil 225 252 - -
Vian4g00662 1203 SMART SMC_hinge_2 522 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vian4g00662 1203 Coils Coil 186 216 - -
Vian4g00662 1203 Gene3D - 683 841 - -
Vian4g00662 1203 Gene3D - 594 659 - -
Vian4g00662 1203 Gene3D - 986 1195 IPR027417 -
Vian4g00662 1203 Coils Coil 687 770 - -
Vian4g00662 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1195 IPR027417 -
Vian4g00662 1203 FunFam Structural maintenance of chromosomes 3 985 1195 - -
Vian4g00662 1203 Pfam RecF/RecN/SMC N terminal domain 2 1179 IPR003395 -
Vian4g00662 1203 Gene3D - 476 593 - -
Vian4g00662 1203 MobiDBLite consensus disorder prediction 1047 1071 - -
Vian4g00662 1203 CDD ABC_SMC3_euk 3 166 IPR041741 GO:0005524|GO:0016887
Vian4g00662 1203 FunFam Structural maintenance of chromosomes 3 1 197 - -
Vian4g00662 1203 Coils Coil 856 925 - -
Vian4g00662 1203 Coils Coil 413 440 - -
Vian4g00662 1203 Coils Coil 323 343 - -
Vian4g00662 1203 Gene3D - 1 178 IPR027417 -
Vian4g00662 1203 SUPERFAMILY Smc hinge domain 473 674 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vian4g00662 1203 Pfam SMC proteins Flexible Hinge Domain 522 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vian4g00662 1203 Coils Coil 476 496 - -
Vian4g00662 1203 Coils Coil 260 294 - -
Vian4g00662 1203 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1196 - -
Vian4g00662 1203 Coils Coil 794 814 - -
Vian4g00662 1203 Coils Coil 973 993 - -
Vian4g00662 1203 PIRSF SMC 1 1193 IPR024704 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00662 Vian-Chr4 7948392 7973001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00662 839 1163 Structural Maintenance of Chromosomes family AT5G15920 22.321 8.57e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00662 K06669 - gmx:100779503 2156.33